Variant report

Variant	rs11014528
Chromosome Location	chr10:25693677-25693678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10399962	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs10508694	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10741075	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs10741077	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10764539	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10764543	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs10828770	0.86[JPT][hapmap]
rs10828774	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10828775	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs10828777	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10828778	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10828791	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828792	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828793	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs10828807	0.93[JPT][hapmap]
rs11014510	0.88[ASN][1000 genomes]
rs11014527	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014529	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014530	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs11014533	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11014550	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11014553	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11014554	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11014558	0.84[CHD][hapmap];0.93[JPT][hapmap]
rs11014559	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs1122775	0.82[ASN][1000 genomes]
rs1122776	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1148154	1.00[JPT][hapmap]
rs11818261	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219956	0.88[ASN][1000 genomes]
rs12240665	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12249852	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12251868	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12251917	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254479	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12256778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12256851	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12258359	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12258665	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12258671	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12259043	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[ASN][1000 genomes]
rs12259696	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs12358447	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12762462	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs12764320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12766749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12773262	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1329259	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1329263	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1329264	0.82[ASN][1000 genomes]
rs1329265	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1340002	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap]
rs1341963	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1341964	1.00[JPT][hapmap]
rs1341966	1.00[JPT][hapmap]
rs1410932	1.00[JPT][hapmap]
rs1413397	1.00[JPT][hapmap]
rs1576317	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1576318	0.80[ASN][1000 genomes]
rs1576320	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1576321	0.82[ASN][1000 genomes]
rs1590836	1.00[JPT][hapmap]
rs1591249	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1591250	0.93[JPT][hapmap]
rs1612200	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1626372	0.82[ASN][1000 genomes]
rs1628986	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1630323	0.82[ASN][1000 genomes]
rs1632593	0.82[ASN][1000 genomes]
rs16925850	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1754251	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1754253	0.84[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs1754254	0.82[ASN][1000 genomes]
rs1754255	0.82[ASN][1000 genomes]
rs1754256	0.82[ASN][1000 genomes]
rs1754258	0.82[ASN][1000 genomes]
rs1754260	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1754264	0.82[ASN][1000 genomes]
rs1754265	0.82[ASN][1000 genomes]
rs1754268	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1754269	0.82[ASN][1000 genomes]
rs1754271	0.81[ASN][1000 genomes]
rs1760716	1.00[JPT][hapmap]
rs1760718	1.00[JPT][hapmap]
rs1760727	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760728	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760729	0.82[ASN][1000 genomes]
rs1760730	0.82[ASN][1000 genomes]
rs1760733	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760734	0.82[ASN][1000 genomes]
rs1760735	0.82[ASN][1000 genomes]
rs1760758	1.00[JPT][hapmap]
rs1760759	1.00[JPT][hapmap]
rs1760762	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1760763	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1760764	0.82[ASN][1000 genomes]
rs1760765	0.82[ASN][1000 genomes]
rs1760766	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1760767	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1773607	0.82[ASN][1000 genomes]
rs1773608	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773609	0.82[ASN][1000 genomes]
rs1773612	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1773614	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773616	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773617	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1773618	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773622	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773623	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1773625	0.93[JPT][hapmap]
rs1773649	1.00[JPT][hapmap]
rs1773650	1.00[JPT][hapmap]
rs1773689	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1773690	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1855461	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2795044	1.00[JPT][hapmap]
rs2807248	0.86[JPT][hapmap]
rs2807253	0.93[JPT][hapmap]
rs2807255	1.00[JPT][hapmap]
rs35663899	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35973294	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4351726	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4431923	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs489052	1.00[JPT][hapmap]
rs489186	1.00[JPT][hapmap]
rs495338	1.00[JPT][hapmap]
rs495456	1.00[JPT][hapmap]
rs509285	1.00[JPT][hapmap]
rs516071	1.00[JPT][hapmap]
rs541206	0.93[JPT][hapmap]
rs543850	0.93[JPT][hapmap]
rs558947	0.86[JPT][hapmap]
rs573812	1.00[JPT][hapmap]
rs7079892	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7090972	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091686	0.82[ASN][1000 genomes]
rs7094439	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722537	0.86[JPT][hapmap]
rs824145	0.86[JPT][hapmap]
rs824146	0.86[JPT][hapmap]
rs824590	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs824592	1.00[JPT][hapmap]
rs824593	0.82[ASN][1000 genomes]
rs824597	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs824598	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs824599	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs862192	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11014528	GPR158	cis	parietal	SCAN
rs11014528	THNSL1	cis	parietal	SCAN
rs11014528	WAC	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25687200-25697800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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