Variant report

Variant	rs11014533
Chromosome Location	chr10:25700861-25700862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508694	0.86[ASN][1000 genomes]
rs10764543	0.86[ASN][1000 genomes]
rs10828791	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10828792	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10828793	0.86[ASN][1000 genomes]
rs11014527	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11014528	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11014529	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11014530	0.86[ASN][1000 genomes]
rs11818261	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12240665	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12249852	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12251868	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12251917	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12254479	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12256778	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12256851	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12258359	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12258665	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12258671	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12259043	0.86[ASN][1000 genomes]
rs12259696	0.86[ASN][1000 genomes]
rs12358447	0.86[ASN][1000 genomes]
rs12764320	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12766749	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35663899	0.86[ASN][1000 genomes]
rs35973294	0.86[ASN][1000 genomes]
rs7090972	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7094439	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25699400-25701400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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