Variant report

Variant	rs11020587
Chromosome Location	chr11:93643089-93643090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93473884..93475767-chr11:93642001..93643799,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182919	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032934	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1032935	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501811	0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1113700	0.86[ASN][1000 genomes]
rs12270580	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1401184	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs1518560	0.81[JPT][hapmap]
rs1605292	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1605293	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850656	0.81[JPT][hapmap]
rs2019595	0.83[ASN][1000 genomes]
rs2203793	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs2460047	0.86[ASN][1000 genomes]
rs2460065	1.00[CEU][hapmap]
rs2462733	1.00[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap]
rs2462735	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs2462758	1.00[CEU][hapmap]
rs2462759	0.81[JPT][hapmap]
rs4590831	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57214110	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57367718	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59013509	0.86[ASN][1000 genomes]
rs60539088	0.84[ASN][1000 genomes]
rs61463513	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6483278	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66650995	0.84[ASN][1000 genomes]
rs67689846	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67926172	0.84[ASN][1000 genomes]
rs68019383	0.84[ASN][1000 genomes]
rs7102891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72962832	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72962854	0.84[ASN][1000 genomes]
rs7932631	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943094	0.81[ASN][1000 genomes]
rs908754	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs978950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978952	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93641600-93652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:93642000-93655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93642200-93649800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:93643000-93643800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links