Variant report

Variant	rs11020616
Chromosome Location	chr11:93691594-93691595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93691026..93692794-chr11:93694188..93696052,2	K562	blood:
2	chr11:93684701..93687298-chr11:93690286..93693320,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10741479	0.81[ASN][1000 genomes]
rs10831150	0.89[ASN][1000 genomes]
rs10831151	0.89[ASN][1000 genomes]
rs11020593	0.81[ASN][1000 genomes]
rs11020605	0.85[ASN][1000 genomes]
rs11020606	0.89[ASN][1000 genomes]
rs11020607	0.89[ASN][1000 genomes]
rs11020608	0.89[ASN][1000 genomes]
rs11020610	0.94[ASN][1000 genomes]
rs1105113	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105114	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11603095	0.89[ASN][1000 genomes]
rs12785240	0.85[ASN][1000 genomes]
rs12786407	0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12786631	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12787903	0.89[ASN][1000 genomes]
rs12789693	0.94[ASN][1000 genomes]
rs12792942	0.89[ASN][1000 genomes]
rs12794588	0.88[ASN][1000 genomes]
rs12807496	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399748	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2456564	0.81[EUR][1000 genomes]
rs2456565	0.81[EUR][1000 genomes]
rs2895491	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34082624	0.89[ASN][1000 genomes]
rs34451374	0.84[ASN][1000 genomes]
rs34537425	0.89[ASN][1000 genomes]
rs34699227	0.89[ASN][1000 genomes]
rs35579191	0.89[ASN][1000 genomes]
rs4753522	0.89[ASN][1000 genomes]
rs4753523	0.89[ASN][1000 genomes]
rs4753524	0.87[ASN][1000 genomes]
rs55756119	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60079517	0.89[ASN][1000 genomes]
rs7484198	0.95[ASN][1000 genomes]
rs7927632	0.94[ASN][1000 genomes]
rs7934440	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942055	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs877341	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs908746	0.93[ASN][1000 genomes]
rs908748	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11020616	FAT3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93689000-93691600	Enhancers	Brain Germinal Matrix	brain
2	chr11:93691400-93691600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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