Variant report

Variant	rs11024059
Chromosome Location	chr11:16880440-16880441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16878376..16881248-chr11:16883308..16886375,3	MCF-7	breast:
2	chr11:16874547..16876364-chr11:16879183..16881324,2	MCF-7	breast:
3	chr11:16869293..16871561-chr11:16878858..16881277,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11024058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024061	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024069	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024071	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12223233	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12223369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226273	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17698419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17772101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756868	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4756871	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4757441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55814202	0.83[AMR][1000 genomes]
rs56005045	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61496580	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72864090	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72864092	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72864100	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:16861800-16880600	Weak transcription	HMEC	breast
3	chr11:16863400-16882000	Weak transcription	Stomach Mucosa	stomach
4	chr11:16863800-16884800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
6	chr11:16864200-16882000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:16867800-16885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
9	chr11:16872200-16882200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:16872200-16884400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:16872600-16889600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:16872800-16883800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:16873000-16881200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:16874400-16881400	Strong transcription	Fetal Intestine Small	intestine
15	chr11:16876000-16881200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:16876000-16883800	Weak transcription	Fetal Brain Female	brain
17	chr11:16876200-16888400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:16876400-16883600	Weak transcription	Spleen	Spleen
19	chr11:16876600-16884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:16876600-16889800	Weak transcription	Adipose Nuclei	Adipose
21	chr11:16876600-16890800	Weak transcription	Colonic Mucosa	Colon
22	chr11:16876800-16881600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:16877800-16883800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:16877800-16890000	Weak transcription	Lung	lung
26	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
27	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:16878000-16889400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:16878200-16881600	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:16878200-16883800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:16878400-16881400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:16878400-16883400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:16878600-16882200	Weak transcription	Brain Anterior Caudate	brain
34	chr11:16878800-16881200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:16878800-16890000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:16879000-16880600	Weak transcription	HepG2	liver
37	chr11:16879000-16881000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:16879000-16881200	Weak transcription	Pancreas	Pancrea
39	chr11:16879000-16881400	Weak transcription	Gastric	stomach
40	chr11:16879000-16881800	Weak transcription	Psoas Muscle	Psoas
41	chr11:16879000-16883600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:16879000-16884200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:16879000-16887600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:16879200-16881400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:16879200-16881600	Weak transcription	Fetal Intestine Large	intestine
46	chr11:16879200-16882000	Weak transcription	Esophagus	oesophagus
47	chr11:16879200-16882000	Weak transcription	Ovary	ovary
48	chr11:16879200-16882000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:16879200-16883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:16879200-16884000	Weak transcription	Liver	Liver

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