Variant report

Variant	rs11024087
Chromosome Location	chr11:16979445-16979446
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16975638..16979707-chr11:16982694..16985336,3	MCF-7	breast:
2	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
3	chr11:16978536..16981349-chr11:16989679..16991819,2	K562	blood:
4	chr11:16970711..16972970-chr11:16979069..16980668,2	K562	blood:
5	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
6	chr11:16977354..16980189-chr11:17097593..17100398,3	MCF-7	breast:
7	chr11:16978286..16981863-chr11:16983113..16986432,3	K562	blood:
8	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10741713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024090	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418111	0.87[JPT][hapmap]
rs16933675	0.86[JPT][hapmap]
rs16933680	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16933682	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16933683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177551	0.81[ASN][1000 genomes]
rs177554	0.83[ASN][1000 genomes]
rs177559	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177560	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177561	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860025	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057788	0.87[JPT][hapmap]
rs2108603	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215086	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2883150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35005405	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35109048	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs369457	0.87[JPT][hapmap]
rs371905	0.87[JPT][hapmap]
rs381815	0.93[JPT][hapmap]
rs387849	0.87[JPT][hapmap]
rs388968	0.85[JPT][hapmap]
rs390974	0.87[JPT][hapmap]
rs393633	0.93[JPT][hapmap]
rs397343	0.87[JPT][hapmap]
rs397373	0.93[JPT][hapmap]
rs400085	0.87[JPT][hapmap]
rs400458	0.87[JPT][hapmap]
rs401820	0.87[JPT][hapmap]
rs406890	0.87[JPT][hapmap]
rs407354	0.93[JPT][hapmap]
rs414219	0.93[JPT][hapmap]
rs414992	0.93[JPT][hapmap]
rs420975	0.87[JPT][hapmap]
rs425325	0.93[JPT][hapmap]
rs428840	0.92[JPT][hapmap]
rs428933	0.87[JPT][hapmap]
rs430211	0.87[JPT][hapmap]
rs431208	0.87[JPT][hapmap]
rs432046	0.93[JPT][hapmap]
rs433212	0.87[JPT][hapmap]
rs433225	0.87[JPT][hapmap]
rs434761	0.86[JPT][hapmap]
rs434899	0.86[JPT][hapmap]
rs435206	0.92[JPT][hapmap]
rs440212	0.87[JPT][hapmap]
rs445146	0.86[JPT][hapmap]
rs445205	0.93[JPT][hapmap]
rs446518	0.92[JPT][hapmap]
rs448671	0.93[JPT][hapmap]
rs450828	0.87[JPT][hapmap]
rs452414	0.87[JPT][hapmap]
rs452745	0.87[JPT][hapmap]
rs454869	0.87[JPT][hapmap]
rs4756875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757445	0.90[ASN][1000 genomes]
rs4757449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757454	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486329	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7396552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481080	0.81[JPT][hapmap]
rs758402	0.83[ASN][1000 genomes]
rs7924696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926335	0.87[JPT][hapmap]
rs7929137	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs982811	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16981400	Weak transcription	Gastric	stomach
3	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
4	chr11:16968400-16980000	Weak transcription	Liver	Liver
5	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
7	chr11:16974800-16980600	Weak transcription	Fetal Lung	lung
8	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
9	chr11:16976200-16980800	Weak transcription	Fetal Kidney	kidney
10	chr11:16978000-16981400	Enhancers	Fetal Intestine Small	intestine
11	chr11:16978600-16980400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:16978600-16981000	Weak transcription	Pancreas	Pancrea
13	chr11:16978600-16981200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:16978600-16981600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:16978600-16987600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:16978600-16988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:16978800-16980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:16978800-16980600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:16978800-16981000	Weak transcription	A549	lung
20	chr11:16979000-16980200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:16979000-16980200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:16979000-16980200	Weak transcription	HepG2	liver
23	chr11:16979000-16980800	Weak transcription	Colonic Mucosa	Colon
24	chr11:16979200-16979600	Weak transcription	Placenta	Placenta
25	chr11:16979200-16980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:16979200-16980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:16979200-16980200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:16979200-16980400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:16979200-16980600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:16979200-16980600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:16979200-16980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:16979400-16979800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:16979400-16979800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:16979400-16979800	Weak transcription	Stomach Mucosa	stomach

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