Variant report

Variant	rs11024091
Chromosome Location	chr11:16979788-16979789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16978536..16981349-chr11:16989679..16991819,2	K562	blood:
2	chr11:16970711..16972970-chr11:16979069..16980668,2	K562	blood:
3	chr11:16976871..16981000-chr11:17000472..17004649,3	MCF-7	breast:
4	chr11:16977354..16980189-chr11:17097593..17100398,3	MCF-7	breast:
5	chr11:16978286..16981863-chr11:16983113..16986432,3	K562	blood:
6	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11024078	1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs11024092	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12275536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12276960	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12278736	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12278828	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280548	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs4757454	0.87[YRI][hapmap]
rs4757456	0.87[YRI][hapmap]
rs4757457	0.83[YRI][hapmap]
rs56918856	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6486315	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102357	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	1.00[EUR][1000 genomes]
rs73427252	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73427255	1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7939987	0.86[YRI][hapmap]
rs7944088	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16981400	Weak transcription	Gastric	stomach
3	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
4	chr11:16968400-16980000	Weak transcription	Liver	Liver
5	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
7	chr11:16974800-16980600	Weak transcription	Fetal Lung	lung
8	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
9	chr11:16976200-16980800	Weak transcription	Fetal Kidney	kidney
10	chr11:16978000-16981400	Enhancers	Fetal Intestine Small	intestine
11	chr11:16978600-16980400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:16978600-16981000	Weak transcription	Pancreas	Pancrea
13	chr11:16978600-16981200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:16978600-16981600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:16978600-16987600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:16978600-16988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:16978800-16980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:16978800-16980600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:16978800-16981000	Weak transcription	A549	lung
20	chr11:16979000-16980200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:16979000-16980200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:16979000-16980200	Weak transcription	HepG2	liver
23	chr11:16979000-16980800	Weak transcription	Colonic Mucosa	Colon
24	chr11:16979200-16980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:16979200-16980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:16979200-16980200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:16979200-16980400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:16979200-16980600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:16979200-16980600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:16979200-16980800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:16979400-16979800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:16979400-16979800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:16979400-16979800	Weak transcription	Stomach Mucosa	stomach
34	chr11:16979600-16979800	Enhancers	Placenta	Placenta

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