Variant report

Variant	rs11024092
Chromosome Location	chr11:16981487-16981488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16759050..16760785-chr11:16980346..16982493,2	MCF-7	breast:
2	chr11:16980702..16983607-chr11:16983722..16985302,2	MCF-7	breast:
3	chr11:16975602..16978503-chr11:16980370..16983065,3	MCF-7	breast:
4	chr11:16981332..16983715-chr11:17008993..17011024,2	MCF-7	breast:
5	chr11:16980966..16983226-chr11:17033903..17037153,3	MCF-7	breast:
6	chr11:16980630..16982721-chr11:16985840..16988789,2	MCF-7	breast:
7	chr11:16970516..16973330-chr11:16980967..16983342,2	K562	blood:
8	chr11:16980989..16984063-chr11:16991605..16994714,3	MCF-7	breast:
9	chr11:16978286..16981863-chr11:16983113..16986432,3	K562	blood:
10	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000110696	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11024078	1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs11024091	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12275536	1.00[EUR][1000 genomes]
rs12276960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278736	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12278828	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280548	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292955	1.00[EUR][1000 genomes]
rs16933508	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933515	1.00[EUR][1000 genomes]
rs16933529	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933548	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16933592	1.00[EUR][1000 genomes]
rs16933661	1.00[EUR][1000 genomes]
rs2190751	1.00[EUR][1000 genomes]
rs4757454	0.87[YRI][hapmap]
rs4757456	0.87[YRI][hapmap]
rs4757457	0.83[YRI][hapmap]
rs56918856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57289260	1.00[EUR][1000 genomes]
rs57818898	1.00[EUR][1000 genomes]
rs58540437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60553604	1.00[EUR][1000 genomes]
rs60977991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61129651	1.00[EUR][1000 genomes]
rs61217675	1.00[EUR][1000 genomes]
rs61475718	1.00[EUR][1000 genomes]
rs6486314	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6486315	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6486316	1.00[EUR][1000 genomes]
rs7102075	1.00[EUR][1000 genomes]
rs7102357	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs7103382	1.00[EUR][1000 genomes]
rs7117859	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs7119994	1.00[EUR][1000 genomes]
rs7122601	1.00[EUR][1000 genomes]
rs7129494	1.00[EUR][1000 genomes]
rs73423200	1.00[EUR][1000 genomes]
rs73425209	1.00[EUR][1000 genomes]
rs73425215	1.00[EUR][1000 genomes]
rs73425221	1.00[EUR][1000 genomes]
rs73425302	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73427255	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73427263	1.00[EUR][1000 genomes]
rs7927866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935333	1.00[EUR][1000 genomes]
rs7939987	0.86[YRI][hapmap]
rs7944088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7946609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
3	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
5	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
6	chr11:16978600-16981600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:16978600-16987600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:16978600-16988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:16979800-16982200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:16979800-16983400	Enhancers	Stomach Mucosa	stomach
11	chr11:16980000-16982400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:16980200-16982200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:16980200-16982400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:16980200-16982600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:16980200-16983800	Enhancers	HepG2	liver
16	chr11:16980400-16981800	Enhancers	Small Intestine	intestine
17	chr11:16980400-16982000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:16980400-16982600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:16980600-16982000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:16980600-16982200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:16980600-16982200	Enhancers	Fetal Lung	lung
22	chr11:16980600-16982400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr11:16980600-16982800	Enhancers	Duodenum Mucosa	Duodenum
24	chr11:16980600-16983200	Enhancers	Fetal Heart	heart
25	chr11:16980800-16981600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:16981000-16981600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr11:16981000-16981800	Weak transcription	Liver	Liver
28	chr11:16981000-16982400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:16981000-16982600	Enhancers	Pancreas	Pancrea
30	chr11:16981200-16981600	Enhancers	Thymus	Thymus
31	chr11:16981200-16982000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:16981200-16982400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:16981200-16984400	Weak transcription	GM12878-XiMat	blood
34	chr11:16981200-16987800	Weak transcription	Fetal Kidney	kidney
35	chr11:16981400-16982000	Enhancers	Fetal Brain Male	brain
36	chr11:16981400-16982000	Enhancers	Lung	lung
37	chr11:16981400-16982200	Enhancers	Right Ventricle	heart
38	chr11:16981400-16982400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:16981400-16982600	Enhancers	Placenta	Placenta
40	chr11:16981400-16983400	Genic enhancers	Fetal Intestine Small	intestine
41	chr11:16981400-16983600	Enhancers	Gastric	stomach
42	chr11:16981400-16989000	Weak transcription	Brain Anterior Caudate	brain

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