Variant report

Variant	rs11024101
Chromosome Location	chr11:17005544-17005545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17004144..17005868-chr11:17008994..17011886,3	MCF-7	breast:
2	chr11:16997178..16999092-chr11:17003135..17008712,4	MCF-7	breast:
3	chr11:16997842..17006545-chr11:17033236..17037894,15	MCF-7	breast:
4	chr11:16999245..17001608-chr11:17002120..17006650,5	MCF-7	breast:
5	chr11:16964831..16967704-chr11:17003456..17005667,3	MCF-7	breast:
6	chr11:17002569..17005587-chr11:17010572..17013703,3	K562	blood:
7	chr11:17001912..17011357-chr11:17032509..17037700,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10766367	0.80[ASN][1000 genomes]
rs10766368	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832707	0.83[ASN][1000 genomes]
rs10832709	0.83[ASN][1000 genomes]
rs10832710	0.80[ASN][1000 genomes]
rs10832712	0.80[ASN][1000 genomes]
rs10832722	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11024102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024103	0.81[ASN][1000 genomes]
rs11024110	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12575487	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2302207	0.80[ASN][1000 genomes]
rs2353369	0.82[ASN][1000 genomes]
rs34927905	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35248152	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4141194	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4237715	0.83[ASN][1000 genomes]
rs4757472	0.81[ASN][1000 genomes]
rs4757474	0.80[ASN][1000 genomes]
rs4757475	0.80[ASN][1000 genomes]
rs6486333	0.81[ASN][1000 genomes]
rs6486334	0.80[ASN][1000 genomes]
rs7118307	0.84[ASN][1000 genomes]
rs7123383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv983149	chr11:17003386-17011615	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16992200-17007400	Weak transcription	Colonic Mucosa	Colon
2	chr11:16998000-17009000	Enhancers	Stomach Mucosa	stomach
3	chr11:16998000-17011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:16998800-17007800	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:17000600-17011800	Enhancers	Pancreas	Pancrea
6	chr11:17000800-17006200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:17001400-17010600	Enhancers	Placenta	Placenta
8	chr11:17001800-17006600	Weak transcription	Liver	Liver
9	chr11:17002000-17006000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:17003000-17009800	Enhancers	Brain Substantia Nigra	brain
11	chr11:17003400-17006000	Weak transcription	Esophagus	oesophagus
12	chr11:17003400-17006000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:17003600-17005600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:17003600-17007800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:17003600-17009800	Enhancers	Brain Anterior Caudate	brain
16	chr11:17004000-17006400	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:17004000-17007400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:17004000-17007600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:17004000-17008000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:17004000-17008200	Weak transcription	Adipose Nuclei	Adipose
21	chr11:17004000-17008200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:17004000-17008400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:17004200-17006000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:17004200-17007200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:17004200-17007200	Weak transcription	Right Ventricle	heart
26	chr11:17004200-17007600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr11:17004200-17007600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:17004200-17008000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:17004200-17008000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:17004200-17011200	Weak transcription	Brain Germinal Matrix	brain
31	chr11:17004400-17006800	Enhancers	HepG2	liver
32	chr11:17004400-17007400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:17004400-17007600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:17004400-17007600	Weak transcription	GM12878-XiMat	blood
35	chr11:17004400-17007800	Weak transcription	Spleen	Spleen
36	chr11:17004600-17006400	Weak transcription	A549	lung
37	chr11:17004600-17006600	Weak transcription	Left Ventricle	heart
38	chr11:17004600-17007000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:17004600-17007600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:17004800-17006000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:17004800-17006000	Weak transcription	Fetal Heart	heart
42	chr11:17004800-17006400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:17004800-17006800	Weak transcription	Fetal Lung	lung
44	chr11:17004800-17007400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:17004800-17008000	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:17005000-17006000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:17005000-17006800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:17005000-17007000	Weak transcription	Fetal Kidney	kidney
50	chr11:17005000-17007600	Weak transcription	Right Atrium	heart

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