Variant report

Variant	rs11024132
Chromosome Location	chr11:17056701-17056702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11600230	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11605779	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11827341	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12417522	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12419179	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28845191	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55928651	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56254605	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57726107	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879670	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61881312	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72870837	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72870840	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7481457	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17037600-17058400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:17037600-17058600	Weak transcription	Gastric	stomach
3	chr11:17037800-17057400	Weak transcription	Fetal Stomach	stomach
4	chr11:17037800-17057800	Weak transcription	Pancreas	Pancrea
5	chr11:17046800-17057400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:17048600-17062000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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