Variant report

Variant	rs11024142
Chromosome Location	chr11:17086632-17086633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17085165..17088143-chr11:17093678..17095207,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741723	0.86[ASN][1000 genomes]
rs10832730	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024146	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024147	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024150	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11024152	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024153	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024185	0.85[ASN][1000 genomes]
rs11024186	0.85[ASN][1000 genomes]
rs11024190	0.84[ASN][1000 genomes]
rs11529145	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11529605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529606	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529608	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12225195	0.86[ASN][1000 genomes]
rs12576590	0.87[ASN][1000 genomes]
rs17847728	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2302511	0.87[ASN][1000 genomes]
rs4757499	0.86[ASN][1000 genomes]
rs6416174	0.87[ASN][1000 genomes]
rs6486349	0.89[ASN][1000 genomes]
rs6486350	0.87[ASN][1000 genomes]
rs6486353	0.87[ASN][1000 genomes]
rs67771121	0.84[ASN][1000 genomes]
rs7113011	0.85[ASN][1000 genomes]
rs7122571	0.83[ASN][1000 genomes]
rs7123825	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127204	0.91[ASN][1000 genomes]
rs72632985	0.84[ASN][1000 genomes]
rs72632986	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632987	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72632988	0.85[ASN][1000 genomes]
rs72632989	0.84[ASN][1000 genomes]
rs72632990	0.84[ASN][1000 genomes]
rs7929047	0.92[ASN][1000 genomes]
rs7934596	0.85[ASN][1000 genomes]
rs7941165	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945756	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
4	chr11:17083800-17093800	Weak transcription	A549	lung
5	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:17085400-17088600	Weak transcription	Brain Substantia Nigra	brain
8	chr11:17085400-17089000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17085400-17089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:17085400-17097200	Weak transcription	Right Ventricle	heart
11	chr11:17085400-17098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:17086000-17094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:17086600-17088400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links