Variant report

Variant	rs11024145
Chromosome Location	chr11:17089005-17089006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17088749..17091320-chr11:17091602..17093720,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10741723	0.86[ASN][1000 genomes]
rs10832730	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832753	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs11024142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024147	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024150	0.97[ASN][1000 genomes]
rs11024152	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11024153	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024185	0.85[ASN][1000 genomes]
rs11024186	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs11024190	0.84[ASN][1000 genomes]
rs11024201	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11529145	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11529605	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529606	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529608	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12225195	1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs12576590	0.87[ASN][1000 genomes]
rs17847728	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs214933	0.89[YRI][hapmap]
rs2302511	0.87[ASN][1000 genomes]
rs4757499	0.86[ASN][1000 genomes]
rs6416174	0.87[ASN][1000 genomes]
rs6486349	0.89[ASN][1000 genomes]
rs6486350	0.87[ASN][1000 genomes]
rs6486353	0.87[ASN][1000 genomes]
rs67771121	0.84[ASN][1000 genomes]
rs7113011	0.85[ASN][1000 genomes]
rs7122571	0.83[ASN][1000 genomes]
rs7123825	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125829	1.00[YRI][hapmap]
rs7127204	0.91[ASN][1000 genomes]
rs72632985	0.84[ASN][1000 genomes]
rs72632986	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632987	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72632988	0.85[ASN][1000 genomes]
rs72632989	0.84[ASN][1000 genomes]
rs72632990	0.84[ASN][1000 genomes]
rs7928860	1.00[YRI][hapmap]
rs7929047	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7934596	0.85[ASN][1000 genomes]
rs7941165	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945756	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
2	chr11:17079400-17094600	Weak transcription	Primary B cells from cord blood	blood
3	chr11:17083800-17093800	Weak transcription	A549	lung
4	chr11:17084400-17095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:17084800-17095200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:17085400-17097200	Weak transcription	Right Ventricle	heart
7	chr11:17085400-17098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:17086000-17094600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:17086800-17094200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:17087000-17093400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:17087000-17093600	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:17087000-17094000	Weak transcription	Lung	lung
13	chr11:17087000-17095400	Weak transcription	Brain Germinal Matrix	brain
14	chr11:17087000-17098000	Weak transcription	Esophagus	oesophagus
15	chr11:17087200-17093800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:17087200-17094600	Weak transcription	HSMM	muscle
17	chr11:17087200-17095000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:17087400-17094600	Weak transcription	NHEK	skin
19	chr11:17087400-17095200	Weak transcription	Fetal Lung	lung
20	chr11:17087600-17093800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:17087600-17094400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:17087600-17095000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:17087800-17089200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:17087800-17092200	Weak transcription	Fetal Brain Female	brain
25	chr11:17087800-17093800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:17087800-17094000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:17087800-17094600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:17087800-17095200	Weak transcription	NHLF	lung
29	chr11:17088200-17094600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:17088200-17094600	Weak transcription	Liver	Liver
31	chr11:17088200-17095000	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:17088400-17089400	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:17088400-17091000	Strong transcription	Fetal Intestine Small	intestine
34	chr11:17088400-17091200	Strong transcription	Fetal Stomach	stomach
35	chr11:17088400-17094400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:17088600-17094800	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:17088600-17095000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:17088600-17095800	Weak transcription	Brain Angular Gyrus	brain
39	chr11:17088600-17096400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:17088800-17095000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:17088800-17095200	Weak transcription	Brain Anterior Caudate	brain
42	chr11:17088800-17095200	Weak transcription	Brain Substantia Nigra	brain
43	chr11:17088800-17095200	Weak transcription	NHDF-Ad	bronchial
44	chr11:17089000-17089400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:17089000-17090000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:17089000-17092600	Weak transcription	Placenta	Placenta
47	chr11:17089000-17093600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:17089000-17093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:17089000-17094600	Weak transcription	Fetal Thymus	thymus

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