Variant report

Variant	rs11024150
Chromosome Location	chr11:17100265-17100266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:17098648-17100585	K562	blood:	n/a	n/a
2	POLR2A	chr11:17100005-17100362	MCF-7	breast:	n/a	n/a
3	UBTF	chr11:17098948-17100483	K562	blood:	n/a	n/a
4	YY1	chr11:17098617-17100362	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:17093738-17102258	K562	blood:	n/a	n/a
6	TAF1	chr11:17098850-17100359	H1-hESC	embryonic stem cell:	n/a	n/a
7	TAF1	chr11:17100215-17100450	K562	blood:	n/a	n/a
8	POLR2A	chr11:17098093-17100321	GM12891	blood:	n/a	n/a
9	POLR2A	chr11:17093851-17100645	GM12878	blood:	n/a	n/a
10	POLR2A	chr11:17100200-17100485	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr11:17094515-17100328	GM12878	blood:	n/a	n/a
12	POLR2A	chr11:17098128-17100520	GM19193	blood:	n/a	n/a
13	POLR2A	chr11:17097758-17100562	H1-hESC	embryonic stem cell:	n/a	n/a
14	YY1	chr11:17098809-17100534	K562	blood:	n/a	n/a
15	POLR2A	chr11:17096761-17100592	HepG2	liver:	n/a	n/a
16	POLR2A	chr11:17094537-17100702	K562	blood:	n/a	n/a
17	POLR2A	chr11:17092732-17100728	GM12891	blood:	n/a	n/a
18	POU2F2	chr11:17098737-17100272	GM12891	blood:	n/a	n/a
19	POLR2A	chr11:17094536-17100574	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr11:17097215-17100753	K562	blood:	n/a	n/a
21	POLR2A	chr11:17098136-17100326	MCF-7	breast:	n/a	n/a
22	POLR2A	chr11:17094401-17100379	GM12892	blood:	n/a	n/a
23	POLR2A	chr11:17100014-17100368	MCF-7	breast:	n/a	n/a
24	POLR2A	chr11:17098188-17100411	GM15510	blood:	n/a	n/a
25	POLR2A	chr11:17096094-17100723	K562	blood:	n/a	n/a
26	ZNF384	chr11:17099029-17100726	K562	blood:	n/a	n/a
27	POLR2A	chr11:17098062-17100400	GM19099	blood:	n/a	n/a
28	E2F6	chr11:17098964-17100277	K562	blood:	n/a	chr11:17099491-17099500 chr11:17099427-17099438
29	POLR2A	chr11:17097800-17100526	K562	blood:	n/a	n/a
30	MYC	chr11:17098273-17100339	K562	blood:	n/a	chr11:17099128-17099138
31	POLR2A	chr11:17096026-17100607	GM18505	blood:	n/a	n/a
32	POLR2A	chr11:17098664-17100394	H1-hESC	embryonic stem cell:	n/a	n/a
33	YY1	chr11:17100239-17100482	GM12878	blood:	n/a	n/a
34	REST	chr11:17098533-17100354	H1-neurons	neurons:	n/a	chr11:17099090-17099103
35	MXI1	chr11:17097588-17100750	SK-N-SH	brain:	n/a	n/a
36	POLR2A	chr11:17097411-17100595	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr11:17098249-17100430	NB4	blood:	n/a	n/a
38	POLR2A	chr11:17098057-17100540	K562	blood:	n/a	n/a
39	HEY1	chr11:17097750-17100479	K562	blood:	n/a	chr11:17099680-17099695
40	YY1	chr11:17100245-17100451	K562	blood:	n/a	n/a
41	POLR2A	chr11:17092645-17100693	SK-N-MC	brain:	n/a	n/a
42	TAF1	chr11:17098885-17100268	GM12878	blood:	n/a	n/a
43	MAX	chr11:17098709-17100523	K562	blood:	n/a	chr11:17099128-17099138

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16804738..16808801-chr11:17097608..17100627,5	K562	blood:
2	chr11:17099350..17101330-chr11:17109097..17111339,2	K562	blood:
3	chr11:16759714..16762827-chr11:17097720..17101099,4	K562	blood:
4	chr11:17097827..17101102-chr11:17296839..17299555,4	K562	blood:
5	chr11:17097769..17100478-chr3:143690055..143692307,2	MCF-7	breast:
6	chr11:17097070..17101102-chr11:17296326..17299484,3	K562	blood:
7	chr11:17027622..17030583-chr11:17098379..17100590,2	K562	blood:
8	chr11:16759176..16761906-chr11:17098692..17100616,2	MCF-7	breast:
9	chr11:17096429..17100576-chr11:17227768..17230724,6	K562	blood:
10	chr11:17099951..17102029-chr11:17121087..17123839,2	MCF-7	breast:
11	chr11:17099995..17101561-chr11:17159735..17162103,2	K562	blood:
12	chr11:16960761..16963314-chr11:17099363..17101117,2	MCF-7	breast:
13	chr11:17097208..17101887-chr11:17227768..17230798,9	K562	blood:
14	chr11:17098478..17100931-chr17:59476241..59478619,2	MCF-7	breast:
15	chr11:17097048..17102595-chr11:17228016..17231208,7	MCF-7	breast:
16	chr11:17008798..17010671-chr11:17099542..17102207,2	MCF-7	breast:
17	chr11:17099359..17101768-chr11:17550989..17553473,2	K562	blood:
18	chr11:17099339..17100906-chr17:80692924..80694500,2	MCF-7	breast:
19	chr11:17097742..17101154-chr11:17227974..17231312,6	MCF-7	breast:

No data

Variant related genes	Relation type
RPS13	TF binding region
SNORD14A	TF binding region
SNORD14B	TF binding region
ENSG00000110696	Chromatin interaction
ENSG00000011405	Chromatin interaction
ENSG00000167363	Chromatin interaction
ENSG00000110693	Chromatin interaction
ENSG00000181744	Chromatin interaction
ENSG00000240808	Chromatin interaction
ENSG00000070081	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000266493	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741723	0.89[ASN][1000 genomes]
rs10832730	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11024142	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11024145	0.97[ASN][1000 genomes]
rs11024146	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11024147	0.99[ASN][1000 genomes]
rs11024152	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024153	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024185	0.88[ASN][1000 genomes]
rs11024186	0.88[ASN][1000 genomes]
rs11024190	0.86[ASN][1000 genomes]
rs11529145	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11529605	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11529606	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11529608	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12225195	0.89[ASN][1000 genomes]
rs12576590	0.90[ASN][1000 genomes]
rs17847728	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302511	0.90[ASN][1000 genomes]
rs4757499	0.89[ASN][1000 genomes]
rs6416174	0.90[ASN][1000 genomes]
rs6486349	0.91[ASN][1000 genomes]
rs6486350	0.90[ASN][1000 genomes]
rs6486353	0.90[ASN][1000 genomes]
rs67771121	0.86[ASN][1000 genomes]
rs7113011	0.88[ASN][1000 genomes]
rs7122571	0.86[ASN][1000 genomes]
rs7123825	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127204	0.93[ASN][1000 genomes]
rs72632985	0.81[ASN][1000 genomes]
rs72632986	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72632987	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72632988	0.88[ASN][1000 genomes]
rs72632989	0.86[ASN][1000 genomes]
rs72632990	0.86[ASN][1000 genomes]
rs7929047	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7934596	0.88[ASN][1000 genomes]
rs7941165	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945756	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17097200-17100400	Active TSS	Right Ventricle	heart
2	chr11:17097600-17100600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:17097800-17100400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr11:17097800-17100400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:17097800-17100400	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr11:17097800-17100600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:17098200-17100400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:17098400-17100400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:17098400-17100400	Active TSS	Esophagus	oesophagus
10	chr11:17098400-17100600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr11:17098400-17100600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:17098400-17100600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:17098400-17100800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:17098600-17100400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr11:17098600-17100400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:17098600-17100400	Active TSS	Brain Anterior Caudate	brain
17	chr11:17098600-17100400	Active TSS	Fetal Brain Female	brain
18	chr11:17098600-17100400	Active TSS	Fetal Intestine Large	intestine
19	chr11:17098600-17100400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr11:17098600-17100400	Active TSS	NH-A	brain
21	chr11:17098600-17100400	Active TSS	Osteobl	bone
22	chr11:17098600-17100600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:17098600-17100600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:17098600-17100600	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr11:17098600-17100600	Active TSS	HMEC	breast
26	chr11:17098600-17100600	Active TSS	HSMM	muscle
27	chr11:17098600-17100600	Active TSS	HUVEC	blood vessel
28	chr11:17098600-17100800	Active TSS	GM12878-XiMat	blood
29	chr11:17098800-17100400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:17098800-17100400	Active TSS	Hela-S3	cervix
31	chr11:17098800-17100400	Active TSS	K562	blood
32	chr11:17098800-17100400	Active TSS	NHEK	skin
33	chr11:17098800-17100600	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr11:17098800-17100800	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:17099000-17100400	Active TSS	A549	lung
36	chr11:17099000-17100600	Active TSS	Brain Germinal Matrix	brain
37	chr11:17099200-17100400	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr11:17099200-17100600	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr11:17099400-17100400	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr11:17099400-17100400	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr11:17099400-17100600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:17099400-17100600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:17099400-17100600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr11:17099400-17100600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr11:17099400-17100800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr11:17099600-17100400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr11:17099600-17100400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr11:17099600-17100400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr11:17099600-17100400	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr11:17099600-17100400	Active TSS	Right Atrium	heart

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