Variant report

Variant	rs11024153
Chromosome Location	chr11:17110249-17110250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17098841..17101190-chr11:17109242..17112099,4	K562	blood:
2	chr11:17101306..17104344-chr11:17107893..17110404,3	MCF-7	breast:
3	chr11:17104120..17106632-chr11:17108690..17110306,2	MCF-7	breast:
4	chr11:17099350..17101330-chr11:17109097..17111339,2	K562	blood:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10741723	0.89[ASN][1000 genomes]
rs10832730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832753	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11024142	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024145	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024146	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024150	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024152	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024185	0.88[ASN][1000 genomes]
rs11024186	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11024190	0.86[ASN][1000 genomes]
rs11024201	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11529145	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11529605	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11529606	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11529608	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12225195	0.89[ASN][1000 genomes]
rs12576590	0.90[ASN][1000 genomes]
rs17847728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2302511	0.90[ASN][1000 genomes]
rs4757499	0.89[ASN][1000 genomes]
rs6416174	0.90[ASN][1000 genomes]
rs6486349	0.91[ASN][1000 genomes]
rs6486350	0.90[ASN][1000 genomes]
rs6486353	0.90[ASN][1000 genomes]
rs67771121	0.86[ASN][1000 genomes]
rs7113011	0.88[ASN][1000 genomes]
rs7122571	0.86[ASN][1000 genomes]
rs7123825	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127204	0.93[ASN][1000 genomes]
rs7127347	0.82[CHB][hapmap]
rs72632985	0.81[ASN][1000 genomes]
rs72632986	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632987	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72632988	0.88[ASN][1000 genomes]
rs72632989	0.86[ASN][1000 genomes]
rs72632990	0.86[ASN][1000 genomes]
rs7929047	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934596	0.88[ASN][1000 genomes]
rs7941165	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945756	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100000-17110800	Weak transcription	Stomach Mucosa	stomach
2	chr11:17100000-17111200	Weak transcription	Aorta	Aorta
3	chr11:17100000-17112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:17100000-17112800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:17100200-17110600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:17100200-17110600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:17100200-17110600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:17100200-17110800	Weak transcription	Fetal Lung	lung
9	chr11:17100200-17111200	Weak transcription	Fetal Stomach	stomach
10	chr11:17100200-17112200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:17100200-17112400	Weak transcription	Psoas Muscle	Psoas
12	chr11:17100200-17112600	Weak transcription	NHLF	lung
13	chr11:17100200-17113200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:17100200-17115000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:17100400-17110400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:17100400-17110600	Weak transcription	Colonic Mucosa	Colon
17	chr11:17100400-17110600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:17100400-17112400	Weak transcription	Fetal Brain Female	brain
19	chr11:17100400-17112400	Weak transcription	Right Ventricle	heart
20	chr11:17100400-17112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:17100400-17119200	Weak transcription	Esophagus	oesophagus
22	chr11:17100400-17119200	Weak transcription	Pancreas	Pancrea
23	chr11:17100400-17119800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
25	chr11:17100600-17110400	Weak transcription	HMEC	breast
26	chr11:17100600-17110800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:17100600-17110800	Weak transcription	Brain Germinal Matrix	brain
28	chr11:17100600-17110800	Weak transcription	Hela-S3	cervix
29	chr11:17100600-17112200	Weak transcription	Small Intestine	intestine
30	chr11:17100600-17112400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:17100600-17113000	Weak transcription	Thymus	Thymus
32	chr11:17100600-17115000	Weak transcription	Spleen	Spleen
33	chr11:17100600-17124200	Weak transcription	Fetal Brain Male	brain
34	chr11:17100800-17110800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:17100800-17119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:17101600-17145000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:17102200-17112800	Weak transcription	K562	blood
38	chr11:17104600-17111200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:17107600-17110600	Weak transcription	NH-A	brain
43	chr11:17107800-17111200	Weak transcription	Gastric	stomach
44	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:17108000-17111600	Weak transcription	Fetal Intestine Small	intestine
46	chr11:17108000-17113800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:17108200-17116800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:17108200-17141400	Strong transcription	Liver	Liver
49	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:17108400-17113800	Strong transcription	Primary B cells from cord blood	blood

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