Variant report

Variant	rs11024168
Chromosome Location	chr11:17172669-17172670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17165805..17167971-chr11:17170717..17172780,2	K562	blood:
2	chr11:17172410..17175625-chr11:17176189..17178392,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466383	1.00[YRI][hapmap]
rs10466420	1.00[YRI][hapmap]
rs11024138	0.83[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	1.00[AFR][1000 genomes]
rs11024172	1.00[AFR][1000 genomes]
rs11024176	1.00[AFR][1000 genomes]
rs11024177	1.00[AFR][1000 genomes]
rs11024214	1.00[YRI][hapmap]
rs11024237	1.00[YRI][hapmap]
rs12272752	1.00[YRI][hapmap]
rs12275377	1.00[AFR][1000 genomes]
rs12277622	1.00[YRI][hapmap]
rs12283197	1.00[YRI][hapmap]
rs12283841	1.00[AFR][1000 genomes]
rs12285914	0.83[AFR][1000 genomes]
rs12287127	1.00[AFR][1000 genomes]
rs12288105	1.00[YRI][hapmap]
rs12288475	1.00[AFR][1000 genomes]
rs12289881	1.00[AFR][1000 genomes]
rs12291395	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12292310	1.00[YRI][hapmap]
rs12292965	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12293793	1.00[YRI][hapmap]
rs28544981	1.00[AFR][1000 genomes]
rs61761999	0.84[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	0.83[AFR][1000 genomes]
rs61763087	0.83[AFR][1000 genomes]
rs7924495	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
7	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
9	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
10	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
11	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
12	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
13	chr11:17150800-17186000	Weak transcription	NHLF	lung
14	chr11:17151000-17173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:17156400-17186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:17156400-17186600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:17156600-17172800	Weak transcription	Brain Angular Gyrus	brain
18	chr11:17156600-17175400	Weak transcription	Esophagus	oesophagus
19	chr11:17156600-17180800	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:17156600-17182400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:17156600-17183600	Weak transcription	Lung	lung
22	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
23	chr11:17156800-17181000	Weak transcription	Brain Germinal Matrix	brain
24	chr11:17157000-17175400	Weak transcription	K562	blood
25	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:17158600-17173200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:17159400-17176000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:17159800-17173200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:17162200-17174000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:17163200-17174600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:17164400-17181200	Weak transcription	Gastric	stomach
32	chr11:17164400-17186200	Weak transcription	A549	lung
33	chr11:17165000-17176000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:17165200-17180600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:17166200-17190200	Weak transcription	NH-A	brain
37	chr11:17166400-17183600	Weak transcription	Fetal Intestine Small	intestine
38	chr11:17167000-17173200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:17167000-17183800	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:17167000-17184000	Weak transcription	Pancreas	Pancrea
41	chr11:17167000-17186000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:17167000-17188600	Weak transcription	Fetal Stomach	stomach
43	chr11:17167000-17188800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:17167200-17175400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:17167200-17178000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:17167400-17178600	Weak transcription	Fetal Kidney	kidney
47	chr11:17167400-17181800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:17167400-17183000	Weak transcription	Dnd41	blood
49	chr11:17167400-17183400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:17167400-17185000	Weak transcription	Ovary	ovary

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