Variant report

Variant	rs11024177
Chromosome Location	chr11:17183504-17183505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17181778..17184549-chr11:17240618..17243052,2	K562	blood:
2	chr11:17182055..17184280-chr11:17186207..17188512,3	K562	blood:
3	chr11:17182736..17185668-chr11:17187012..17188861,2	K562	blood:
4	chr11:17183106..17184886-chr11:17186963..17189434,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466383	1.00[YRI][hapmap]
rs10466420	1.00[YRI][hapmap]
rs11024138	0.83[AFR][1000 genomes]
rs11024168	1.00[AFR][1000 genomes]
rs11024169	0.91[AFR][1000 genomes]
rs11024170	1.00[AFR][1000 genomes]
rs11024172	1.00[AFR][1000 genomes]
rs11024176	1.00[AFR][1000 genomes]
rs11024214	1.00[YRI][hapmap]
rs11024237	1.00[YRI][hapmap]
rs12272752	1.00[YRI][hapmap]
rs12275377	1.00[AFR][1000 genomes]
rs12277622	1.00[YRI][hapmap]
rs12283197	1.00[YRI][hapmap]
rs12283841	1.00[AFR][1000 genomes]
rs12285914	0.83[AFR][1000 genomes]
rs12287127	1.00[AFR][1000 genomes]
rs12288105	1.00[YRI][hapmap]
rs12288475	1.00[AFR][1000 genomes]
rs12289881	1.00[AFR][1000 genomes]
rs12291395	1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12292310	1.00[YRI][hapmap]
rs12292965	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12293793	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs28544981	1.00[AFR][1000 genomes]
rs61761999	0.84[AFR][1000 genomes]
rs61762000	0.91[AFR][1000 genomes]
rs61763070	0.83[AFR][1000 genomes]
rs61763087	0.83[AFR][1000 genomes]
rs7924495	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
2	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
3	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
4	chr11:17150800-17186000	Weak transcription	NHLF	lung
5	chr11:17156400-17186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:17156400-17186600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:17156600-17183600	Weak transcription	Lung	lung
8	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
9	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:17164400-17186200	Weak transcription	A549	lung
11	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:17166200-17190200	Weak transcription	NH-A	brain
13	chr11:17166400-17183600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:17167000-17183800	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:17167000-17184000	Weak transcription	Pancreas	Pancrea
16	chr11:17167000-17186000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:17167000-17188600	Weak transcription	Fetal Stomach	stomach
18	chr11:17167000-17188800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:17167400-17185000	Weak transcription	Ovary	ovary
20	chr11:17167400-17186800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:17167400-17190200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:17167400-17190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:17167400-17204400	Weak transcription	Thymus	Thymus
24	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
26	chr11:17167600-17186400	Weak transcription	HMEC	breast
27	chr11:17168000-17190200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:17168200-17183600	Weak transcription	Left Ventricle	heart
29	chr11:17168200-17185000	Weak transcription	Right Ventricle	heart
30	chr11:17168200-17193800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:17169400-17185600	Weak transcription	Hela-S3	cervix
32	chr11:17169400-17190600	Weak transcription	HSMM	muscle
33	chr11:17170800-17186400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:17171400-17186200	Weak transcription	Osteobl	bone
35	chr11:17172200-17184000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
37	chr11:17173000-17186600	Weak transcription	NHEK	skin
38	chr11:17173600-17190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:17176200-17186200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:17176600-17183800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:17176600-17185400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:17176600-17185400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:17176600-17185800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:17176600-17190200	Weak transcription	Fetal Intestine Large	intestine
45	chr11:17176800-17188600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:17176800-17190200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:17177000-17186000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:17177000-17187800	Enhancers	HUVEC	blood vessel
49	chr11:17177000-17189200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr11:17178200-17188200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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