Variant report

Variant	rs11024180
Chromosome Location	chr11:17196452-17196453
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17194253..17196723-chr11:17227181..17229874,2	MCF-7	breast:
2	chr11:17196415..17198675-chr11:17200267..17202983,2	K562	blood:
3	chr11:17193774..17196751-chr11:17204153..17207102,2	K562	blood:

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11600230	0.82[ASN][1000 genomes]
rs11603765	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11605718	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11825018	0.82[AFR][1000 genomes]
rs11826970	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419179	0.82[ASN][1000 genomes]
rs1471980	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16924899	0.82[ASN][1000 genomes]
rs16933823	0.82[ASN][1000 genomes]
rs16933827	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16933873	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1967077	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1974527	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2040859	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28845191	0.82[ASN][1000 genomes]
rs35493302	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57726107	0.82[ASN][1000 genomes]
rs59545597	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60698184	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61879695	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61879701	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7925960	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	esv2524703	chr11:17195116-17196745	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3419527	chr11:17195126-17197174	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
2	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
3	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17167400-17204400	Weak transcription	Thymus	Thymus
6	chr11:17167400-17212600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
8	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
9	chr11:17182000-17196800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:17182200-17196800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
12	chr11:17185800-17207400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:17185800-17212800	Weak transcription	Pancreas	Pancrea
14	chr11:17187000-17198000	Weak transcription	HMEC	breast
15	chr11:17187000-17212600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
17	chr11:17187200-17207200	Weak transcription	K562	blood
18	chr11:17187200-17210000	Weak transcription	Psoas Muscle	Psoas
19	chr11:17187200-17210000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:17187200-17212600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:17187200-17214000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:17187200-17214200	Weak transcription	Right Ventricle	heart
23	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
24	chr11:17189200-17197600	Weak transcription	Fetal Intestine Small	intestine
25	chr11:17189400-17203200	Weak transcription	Fetal Stomach	stomach
26	chr11:17190400-17197600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:17191000-17199000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:17191000-17203800	Weak transcription	Liver	Liver
29	chr11:17191000-17204000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:17191000-17207600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:17191000-17210000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:17191000-17210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:17191200-17198000	Weak transcription	Left Ventricle	heart
35	chr11:17191200-17201600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:17191200-17202600	Weak transcription	Fetal Intestine Large	intestine
37	chr11:17191200-17204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:17191200-17204400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:17191200-17204800	Weak transcription	Primary T cells from cord blood	blood
40	chr11:17191200-17208600	Weak transcription	GM12878-XiMat	blood
41	chr11:17191200-17209800	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:17191200-17210000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:17191200-17210000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:17191200-17212200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:17191200-17212400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:17191200-17212600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:17191200-17213000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:17191200-17213000	Weak transcription	Dnd41	blood
49	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:17191400-17198000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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