Variant report

Variant	rs11024186
Chromosome Location	chr11:17216183-17216184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17214868..17217658-chr11:17229098..17231108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10430892	1.00[EUR][1000 genomes]
rs10741723	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832730	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10832753	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap]
rs11024142	0.85[ASN][1000 genomes]
rs11024145	0.85[ASN][1000 genomes]
rs11024146	0.86[ASN][1000 genomes]
rs11024147	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes]
rs11024150	0.88[ASN][1000 genomes]
rs11024152	0.86[ASN][1000 genomes]
rs11024153	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11024185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024190	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024197	1.00[EUR][1000 genomes]
rs11024199	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024226	1.00[EUR][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	1.00[EUR][1000 genomes]
rs12225195	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226898	0.81[ASN][1000 genomes]
rs12576590	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17847728	0.87[ASN][1000 genomes]
rs214933	0.83[LWK][hapmap];0.83[YRI][hapmap]
rs2302511	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4468326	0.83[LWK][hapmap]
rs4757499	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486349	0.85[ASN][1000 genomes]
rs6486350	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6486353	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67771121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113011	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123825	0.86[ASN][1000 genomes]
rs7125085	0.83[AFR][1000 genomes]
rs7125829	1.00[YRI][hapmap]
rs7127204	0.94[ASN][1000 genomes]
rs7127347	0.91[CHB][hapmap]
rs7130826	0.83[LWK][hapmap]
rs72632986	0.86[ASN][1000 genomes]
rs72632987	0.86[ASN][1000 genomes]
rs72632988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632989	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72632990	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7928860	1.00[YRI][hapmap]
rs7929047	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7934596	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941165	0.87[ASN][1000 genomes]
rs7945756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
2	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
3	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
4	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
5	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
6	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:17192400-17217800	Weak transcription	Stomach Mucosa	stomach
9	chr11:17194200-17228000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:17197600-17228000	Weak transcription	Brain Angular Gyrus	brain
11	chr11:17203000-17228800	Weak transcription	Spleen	Spleen
12	chr11:17205400-17220200	Weak transcription	Aorta	Aorta
13	chr11:17207400-17228200	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:17208800-17227400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:17209400-17228000	Weak transcription	K562	blood
16	chr11:17209800-17217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:17210000-17220200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:17210200-17220400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:17210400-17227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:17210600-17228200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:17210600-17228200	Weak transcription	Brain Substantia Nigra	brain
22	chr11:17210800-17222400	Weak transcription	Psoas Muscle	Psoas
23	chr11:17210800-17228000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:17211200-17216600	Strong transcription	Fetal Stomach	stomach
25	chr11:17212200-17216200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:17212400-17216200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:17212400-17216200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr11:17212400-17216400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:17212400-17216400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:17212600-17216200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:17212600-17216200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr11:17212600-17216200	Strong transcription	HUVEC	blood vessel
33	chr11:17212600-17228600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:17212800-17216200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:17212800-17216200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:17212800-17216200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:17212800-17216200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:17212800-17216200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:17212800-17216400	Strong transcription	Fetal Muscle Leg	muscle
40	chr11:17212800-17216400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:17212800-17216800	Strong transcription	HepG2	liver
42	chr11:17212800-17217000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:17213000-17216200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:17213000-17216200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:17213000-17216400	Strong transcription	Thymus	Thymus
46	chr11:17213000-17227400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:17213200-17218200	Weak transcription	Right Atrium	heart
48	chr11:17213200-17218800	Weak transcription	NHDF-Ad	bronchial
49	chr11:17213200-17228200	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:17213400-17216600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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