Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10430892	1.00[EUR][1000 genomes]
rs10832749	0.82[ASN][1000 genomes]
rs11024185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024186	1.00[EUR][1000 genomes]
rs11024190	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11024199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11024201	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024215	0.84[ASN][1000 genomes]
rs11024218	0.84[ASN][1000 genomes]
rs11024226	1.00[EUR][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	1.00[EUR][1000 genomes]
rs12225195	1.00[EUR][1000 genomes]
rs12226898	0.91[ASN][1000 genomes]
rs12576590	1.00[EUR][1000 genomes]
rs2302511	1.00[EUR][1000 genomes]
rs4757499	1.00[EUR][1000 genomes]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	1.00[EUR][1000 genomes]
rs6486350	1.00[EUR][1000 genomes]
rs6486353	1.00[EUR][1000 genomes]
rs67771121	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68175505	0.83[ASN][1000 genomes]
rs7101938	0.86[ASN][1000 genomes]
rs7111505	0.81[ASN][1000 genomes]
rs7113011	1.00[EUR][1000 genomes]
rs7122571	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72632988	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72632989	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72632990	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7934596	1.00[EUR][1000 genomes]
rs7945756	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17230800-17239600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17231600-17243400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:17232800-17251200	Weak transcription	Lung	lung
4	chr11:17233200-17251800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:17236000-17242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:17236400-17240600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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