Variant report

Variant	rs11024201
Chromosome Location	chr11:17241866-17241867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17228819..17230367-chr11:17240821..17243550,2	MCF-7	breast:
2	chr11:17228521..17232623-chr11:17240858..17244589,6	MCF-7	breast:
3	chr11:17237750..17239535-chr11:17241512..17245226,3	MCF-7	breast:
4	chr11:17237703..17242484-chr11:17242946..17247275,6	K562	blood:
5	chr11:17181778..17184549-chr11:17240618..17243052,2	K562	blood:

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10430892	1.00[EUR][1000 genomes]
rs10741723	0.82[ASN][1000 genomes]
rs10832730	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10832749	0.88[ASN][1000 genomes]
rs10832753	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11024147	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11024153	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11024185	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11024197	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024215	0.90[ASN][1000 genomes]
rs11024218	0.90[ASN][1000 genomes]
rs11024226	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11024243	1.00[EUR][1000 genomes]
rs11024245	1.00[EUR][1000 genomes]
rs11024246	1.00[EUR][1000 genomes]
rs12225195	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12226898	0.95[ASN][1000 genomes]
rs12576590	1.00[EUR][1000 genomes]
rs2302511	1.00[EUR][1000 genomes]
rs4757499	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61555995	1.00[EUR][1000 genomes]
rs6416174	1.00[EUR][1000 genomes]
rs6486350	1.00[EUR][1000 genomes]
rs6486353	1.00[EUR][1000 genomes]
rs67771121	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68175505	0.89[ASN][1000 genomes]
rs7101938	0.93[ASN][1000 genomes]
rs7111505	0.87[ASN][1000 genomes]
rs7113011	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7122571	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127204	0.80[ASN][1000 genomes]
rs7127347	0.91[CHB][hapmap]
rs72632988	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72632989	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72632990	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7929047	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7934596	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7945756	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17231600-17243400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:17232800-17251200	Weak transcription	Lung	lung
3	chr11:17233200-17251800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:17236000-17242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:17241000-17251600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:17241800-17243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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