Variant report

Variant	rs11024302
Chromosome Location	chr11:17504700-17504701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11024306	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281584	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294674	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36234278	0.92[EUR][1000 genomes]
rs55735208	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063548	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070367	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095800	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56130449	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170308	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57520450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58150842	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985571	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17501600-17505800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:17501600-17506200	Weak transcription	Fetal Intestine Large	intestine
3	chr11:17501600-17507600	Weak transcription	Gastric	stomach
4	chr11:17504600-17507800	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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