Variant report

Variant	rs11024415
Chromosome Location	chr11:17852270-17852271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1005008	0.89[AMR][1000 genomes]
rs10466421	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11821847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1548528	0.82[CHB][hapmap];0.88[AMR][1000 genomes]
rs2107427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2158395	0.81[CHB][hapmap]
rs2158396	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2237943	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2237944	0.82[CHB][hapmap];0.92[AMR][1000 genomes]
rs2237946	0.90[CHB][hapmap];0.88[AMR][1000 genomes]
rs2237948	0.90[CHB][hapmap];0.88[AMR][1000 genomes]
rs2283249	0.81[CHB][hapmap]
rs2299632	0.81[CHB][hapmap]
rs4757591	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4757593	0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6486398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6486399	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7106840	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7115183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7124199	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs718439	0.90[CHB][hapmap];0.88[AMR][1000 genomes]
rs765989	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs7929668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932686	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7935967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1043973	chr11:17781560-17869896	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17806800-17867400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:17808200-17861400	Weak transcription	Thymus	Thymus
3	chr11:17833800-17867400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:17835000-17869400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:17835200-17884200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17838400-17971600	Weak transcription	Gastric	stomach
7	chr11:17838800-17860800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:17844800-17862000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:17848600-17853000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:17850400-17852800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:17850400-17866200	Weak transcription	Aorta	Aorta
12	chr11:17851200-17867000	Weak transcription	Primary T cells from cord blood	blood
13	chr11:17851400-17853800	Enhancers	Psoas Muscle	Psoas
14	chr11:17851600-17853000	Enhancers	Ovary	ovary
15	chr11:17851600-17890800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:17851800-17855400	Weak transcription	Fetal Stomach	stomach
17	chr11:17852000-17852400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:17852000-17852400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr11:17852000-17853000	Enhancers	Spleen	Spleen
20	chr11:17852200-17853600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:17852200-17867800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:17852200-17875800	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links