Variant report
| Variant | rs11024539 |
|---|---|
| Chromosome Location | chr11:18205605-18205606 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr11:18205467-18205643 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| GLTPP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10766458 | 0.92[ASN][1000 genomes] |
| rs10832890 | 0.84[ASW][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10832893 | 0.80[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11024502 | 0.87[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes] |
| rs11024530 | 0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11024531 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11603777 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12285875 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1531104 | 0.80[CHD][hapmap] |
| rs1902266 | 0.81[CHB][hapmap];0.84[JPT][hapmap] |
| rs1968732 | 0.80[CHD][hapmap] |
| rs2078066 | 0.80[CHD][hapmap] |
| rs2403247 | 0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2445148 | 0.82[ASN][1000 genomes] |
| rs2445180 | 0.83[CHB][hapmap] |
| rs2445205 | 0.80[CHD][hapmap] |
| rs2445206 | 0.80[CHD][hapmap] |
| rs2468772 | 0.82[ASN][1000 genomes] |
| rs2468774 | 0.83[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2860278 | 0.80[CHD][hapmap] |
| rs4417246 | 0.91[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4630269 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949248 | chr11:17791822-18692687 | Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 156 gene(s) | inside rSNPs | diseases |
| 2 | nsv428569 | chr11:18194030-18350869 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
