Variant report

Variant	rs11024561
Chromosome Location	chr11:18243029-18243030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10766463	0.88[EUR][1000 genomes]
rs10832908	0.83[EUR][1000 genomes]
rs11024563	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11024578	0.81[EUR][1000 genomes]
rs2168363	0.83[EUR][1000 genomes]
rs2445145	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2445175	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2445176	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2445218	0.87[AMR][1000 genomes]
rs2445225	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2445226	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2460831	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2468779	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468790	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2468856	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2925145	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757628	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4757629	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4757630	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56310011	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67006796	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67712345	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7103794	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7117484	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7117890	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7935726	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv975156	chr11:18230807-18245674	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3440516	chr11:18242376-18246674	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18242000-18243400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:18242000-18243400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:18243000-18243200	Enhancers	Liver	Liver
4	chr11:18243000-18243400	Flanking Active TSS	HepG2	liver

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