Variant report

Variant	rs11024576
Chromosome Location	chr11:18261203-18261204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr11:18261184-18261613	HepG2	liver:	n/a	chr11:18261381-18261396
2	FOXA1	chr11:18261112-18261652	HepG2	liver:	n/a	n/a
3	EP300	chr11:18261163-18261546	HepG2	liver:	n/a	n/a
4	ARID3A	chr11:18260959-18261547	HepG2	liver:	n/a	n/a
5	SP1	chr11:18261116-18261605	HepG2	liver:	n/a	n/a
6	FOXA1	chr11:18261155-18261615	HepG2	liver:	n/a	n/a
7	FOXA1	chr11:18261197-18261694	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SAA4	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10766463	0.83[AMR][1000 genomes]
rs10832904	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832908	0.85[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024553	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024562	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024566	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024577	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024578	0.85[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11601002	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12361253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364058	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364776	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12791694	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1915391	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2168363	0.85[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2445218	0.88[EUR][1000 genomes]
rs4757627	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757628	0.81[AMR][1000 genomes]
rs4757629	0.81[AMR][1000 genomes]
rs4757630	0.81[AMR][1000 genomes]
rs67006796	0.81[AMR][1000 genomes]
rs67712345	0.81[AMR][1000 genomes]
rs7103794	0.81[AMR][1000 genomes]
rs7117484	0.81[AMR][1000 genomes]
rs7117890	0.81[AMR][1000 genomes]
rs72881516	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935726	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18258800-18262800	Enhancers	HepG2	liver
2	chr11:18258800-18265800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:18259600-18266600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:18260000-18278200	Weak transcription	Aorta	Aorta
5	chr11:18261000-18261400	Flanking Active TSS	Liver	Liver

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