Variant report

Variant	rs11024591
Chromosome Location	chr11:18285205-18285206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
RNA5SP334	TF binding region
SAA1	TF binding region
ENSG00000134333	Chromatin interaction
ENSG00000120697	Chromatin interaction
ENSG00000120699	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11024595	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1122938	1.00[YRI][hapmap]
rs12270139	0.82[ASN][1000 genomes]
rs12420659	0.94[ASN][1000 genomes]
rs12420731	0.94[ASN][1000 genomes]
rs12575499	1.00[YRI][hapmap]
rs36096297	0.95[ASN][1000 genomes]
rs4150599	1.00[YRI][hapmap]
rs4150675	1.00[YRI][hapmap]
rs57322649	0.94[ASN][1000 genomes]
rs59873620	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61882734	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882736	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61882737	0.92[ASN][1000 genomes]
rs61882738	0.95[ASN][1000 genomes]
rs61882740	0.96[ASN][1000 genomes]
rs61884285	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18278400-18293200	Weak transcription	Aorta	Aorta
2	chr11:18280400-18286200	Enhancers	HepG2	liver
3	chr11:18281400-18289400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:18282000-18286600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:18283600-18291000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:18283600-18301600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:18283800-18286800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:18284200-18285800	Enhancers	HSMMtube	muscle
9	chr11:18284600-18286200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:18284800-18285600	Enhancers	Liver	Liver
11	chr11:18285200-18285400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:18285200-18285400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:18285200-18285400	Weak transcription	Gastric	stomach
14	chr11:18285200-18285600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:18285200-18285800	Flanking Active TSS	GM12878-XiMat	blood
16	chr11:18285200-18287800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:18285200-18289200	Weak transcription	Hela-S3	cervix
18	chr11:18285200-18291200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:18285200-18303200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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