Variant report

Variant	rs11024735
Chromosome Location	chr11:18639167-18639168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18626711..18629551-chr11:18638352..18640107,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10128711	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500834	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832950	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832954	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832956	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832961	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832962	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024739	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024743	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2084220	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2896537	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4237722	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757674	0.81[ASN][1000 genomes]
rs4757676	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943121	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv516413	chr11:18628418-18643758	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18624800-18640800	Weak transcription	Right Atrium	heart
2	chr11:18629000-18654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:18630400-18639800	Weak transcription	Fetal Heart	heart
4	chr11:18630800-18654800	Weak transcription	Psoas Muscle	Psoas
5	chr11:18636800-18643600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:18637000-18640400	Weak transcription	Stomach Mucosa	stomach
7	chr11:18637000-18645400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:18637000-18655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:18637200-18639400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:18637200-18639800	Weak transcription	Brain Germinal Matrix	brain
11	chr11:18637400-18639400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:18637400-18639600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:18637400-18640000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:18637400-18640000	Weak transcription	Fetal Brain Female	brain
15	chr11:18637400-18644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:18637400-18654400	Weak transcription	Brain Angular Gyrus	brain
17	chr11:18637400-18654400	Weak transcription	Fetal Intestine Small	intestine
18	chr11:18637400-18654800	Weak transcription	Esophagus	oesophagus
19	chr11:18637400-18654800	Weak transcription	Lung	lung
20	chr11:18637400-18654800	Weak transcription	Pancreas	Pancrea
21	chr11:18637600-18639200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:18637600-18639400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:18637600-18639400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:18637600-18639400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:18637600-18639400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:18637600-18639400	Weak transcription	NH-A	brain
27	chr11:18637600-18639400	Weak transcription	Osteobl	bone
28	chr11:18637600-18639600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:18637600-18639600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:18637600-18639600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:18637600-18639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:18637600-18639600	Weak transcription	Fetal Brain Male	brain
33	chr11:18637600-18639600	Weak transcription	Small Intestine	intestine
34	chr11:18637600-18639600	Weak transcription	HMEC	breast
35	chr11:18637600-18639600	Weak transcription	NHLF	lung
36	chr11:18637600-18639800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:18637600-18639800	Weak transcription	Aorta	Aorta
38	chr11:18637600-18639800	Weak transcription	Brain Anterior Caudate	brain
39	chr11:18637600-18639800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:18637600-18639800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:18637600-18639800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:18637600-18640000	Weak transcription	Fetal Stomach	stomach
43	chr11:18637600-18640000	Weak transcription	NHEK	skin
44	chr11:18637600-18640200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:18637600-18640200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:18637600-18640800	Enhancers	Primary hematopoietic stem cells	blood
47	chr11:18637600-18640800	Weak transcription	Ovary	ovary
48	chr11:18637600-18641800	Weak transcription	Colonic Mucosa	Colon
49	chr11:18637600-18645200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:18637600-18650000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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