Variant report

Variant	rs11024755
Chromosome Location	chr11:18690446-18690447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18690057..18690608-chr9:21683732..21684232,2	HCT-116	colon:
2	chr11:18689719..18691754-chr11:18747384..18748928,2	K562	blood:

Variant related genes	Relation type
ENSG00000179057	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2121389	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4757695	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58346558	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71486871	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18687000-18719800	Weak transcription	Ovary	ovary
2	chr11:18687200-18690800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:18687400-18690800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:18687600-18690800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:18687800-18690600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:18687800-18690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:18689000-18691600	Enhancers	Stomach Mucosa	stomach
8	chr11:18689400-18690600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:18689600-18691600	Enhancers	HMEC	breast
10	chr11:18689800-18690600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:18689800-18690600	Enhancers	Hela-S3	cervix
12	chr11:18689800-18690800	Enhancers	Osteobl	bone
13	chr11:18689800-18691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:18689800-18691200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr11:18689800-18691200	Enhancers	HepG2	liver
16	chr11:18689800-18691400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:18689800-18691600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:18689800-18691600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:18689800-18696000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr11:18690000-18690800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr11:18690000-18691400	Enhancers	K562	blood
22	chr11:18690200-18690600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:18690200-18690600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:18690200-18690600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:18690200-18690600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:18690200-18690800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:18690200-18691400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr11:18690200-18691600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:18690200-18691600	Enhancers	Pancreas	Pancrea
30	chr11:18690400-18690600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:18690400-18690600	Enhancers	NHEK	skin
32	chr11:18690400-18691000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:18690400-18691000	Weak transcription	A549	lung
34	chr11:18690400-18691600	Enhancers	Monocytes-CD14+_RO01746	blood

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