Variant report

Variant	rs1102707
Chromosome Location	chr1:172699409-172699410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10912460	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1102704	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1102706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11581258	0.82[JPT][hapmap]
rs11587368	0.82[JPT][hapmap]
rs12136569	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs704845	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859618	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs859619	0.85[EUR][1000 genomes]
rs859621	0.88[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs859623	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs859629	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs859631	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs859633	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859634	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859636	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859637	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859638	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859639	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859641	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859643	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859644	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859647	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859648	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859673	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs863578	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs974856	0.82[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:172693400-172712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172696800-172702600	Weak transcription	Monocytes-CD14+_RO01746	blood

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