Variant report

Variant	rs11032656
Chromosome Location	chr11:34426797-34426798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr11:34426750-34427052	K562	blood:	n/a	chr11:34426894-34426908 chr11:34426898-34426908 chr11:34426897-34426909 chr11:34426898-34426912 chr11:34426899-34426910 chr11:34426898-34426909 chr11:34426897-34426914
2	USF1	chr11:34426666-34426942	H1-hESC	embryonic stem cell:	n/a	chr11:34426801-34426812
3	BRCA1	chr11:34426536-34426978	Hela-S3	cervix:	n/a	n/a
4	USF1	chr11:34426613-34427004	ECC-1	luminal epithelium:	n/a	chr11:34426801-34426812
5	USF1	chr11:34426639-34426968	A549	lung:	n/a	chr11:34426801-34426812
6	STAT3	chr11:34426555-34426930	MCF10A-Er-Src	breast:	n/a	chr11:34426898-34426909
7	STAT3	chr11:34426638-34426941	Hela-S3	cervix:	n/a	chr11:34426898-34426909
8	POU2F2	chr11:34426555-34426962	GM12878	blood:	n/a	n/a
9	USF2	chr11:34426710-34426859	HepG2	liver:	n/a	chr11:34426801-34426812
10	MAX	chr11:34426626-34426990	Hela-S3	cervix:	n/a	n/a
11	BCL11A	chr11:34426650-34426849	GM12878	blood:	n/a	n/a
12	RCOR1	chr11:34426673-34427015	Hela-S3	cervix:	n/a	n/a
13	IRF1	chr11:34426783-34426982	K562	blood:	n/a	chr11:34426894-34426908 chr11:34426898-34426908 chr11:34426897-34426909 chr11:34426898-34426912 chr11:34426899-34426910 chr11:34426898-34426909 chr11:34426897-34426914
14	CEBPB	chr11:34426558-34427003	Hela-S3	cervix:	n/a	n/a
15	BHLHE40	chr11:34426632-34426880	GM12878	blood:	n/a	n/a
16	NFE2	chr11:34426795-34426871	GM12878	blood:	n/a	n/a
17	USF1	chr11:34426612-34426900	H1-hESC	embryonic stem cell:	n/a	chr11:34426801-34426812
18	USF1	chr11:34426636-34426972	ECC-1	luminal epithelium:	n/a	chr11:34426801-34426812
19	USF1	chr11:34426607-34426963	K562	blood:	n/a	chr11:34426801-34426812
20	SPI1	chr11:34426698-34427114	HL-60	blood:	n/a	chr11:34426909-34426922
21	BCL3	chr11:34426572-34426824	GM12878	blood:	n/a	n/a
22	TBP	chr11:34426602-34426975	Hela-S3	cervix:	n/a	n/a
23	ELF1	chr11:34426639-34426968	K562	blood:	n/a	n/a
24	USF1	chr11:34426596-34426994	HCT-116	colon:	n/a	chr11:34426801-34426812
25	STAT3	chr11:34426539-34426958	MCF10A-Er-Src	breast:	n/a	chr11:34426898-34426909
26	SMC3	chr11:34426623-34426961	Hela-S3	cervix:	n/a	n/a
27	PRDM1	chr11:34426650-34427096	Hela-S3	cervix:	n/a	chr11:34426897-34426911 chr11:34426896-34426911 chr11:34426901-34426910 chr11:34426897-34426910
28	STAT3	chr11:34426297-34426928	MCF10A-Er-Src	breast:	n/a	chr11:34426898-34426909
29	MYC	chr11:34426553-34426929	MCF10A-Er-Src	breast:	n/a	n/a
30	USF1	chr11:34426653-34426945	A549	lung:	n/a	chr11:34426801-34426812
31	USF1	chr11:34426599-34426899	SK-N-SH_RA	brain:	n/a	chr11:34426801-34426812
32	USF1	chr11:34426686-34426864	SK-N-SH_RA	brain:	n/a	chr11:34426801-34426812
33	USF1	chr11:34426651-34426969	A549	lung:	n/a	chr11:34426801-34426812
34	EP300	chr11:34426552-34426933	Hela-S3	cervix:	n/a	chr11:34426893-34426907 chr11:34426911-34426920
35	RAD21	chr11:34426669-34426946	Hela-S3	cervix:	n/a	n/a
36	FOS	chr11:34426540-34426966	MCF10A-Er-Src	breast:	n/a	chr11:34426909-34426918
37	POLR2A	chr11:34426599-34426846	U87	brain:	n/a	n/a
38	EP300	chr11:34426791-34426916	GM12878	blood:	n/a	chr11:34426893-34426907
39	USF1	chr11:34426604-34426966	A549	lung:	n/a	chr11:34426801-34426812
40	USF1	chr11:34426710-34426855	HepG2	liver:	n/a	chr11:34426801-34426812
41	STAT3	chr11:34426522-34426940	MCF10A-Er-Src	breast:	n/a	chr11:34426898-34426909
42	FOS	chr11:34426594-34426965	MCF10A-Er-Src	breast:	n/a	chr11:34426909-34426918
43	BATF	chr11:34426582-34426882	GM12878	blood:	n/a	chr11:34426771-34426782
44	USF1	chr11:34426686-34427015	SK-N-SH	brain:	n/a	chr11:34426801-34426812
45	RFX5	chr11:34426579-34426986	Hela-S3	cervix:	n/a	n/a
46	JUND	chr11:34426545-34426957	Hela-S3	cervix:	n/a	chr11:34426909-34426918
47	EP300	chr11:34426614-34426834	GM12878	blood:	n/a	n/a
48	USF2	chr11:34426598-34427035	Hela-S3	cervix:	n/a	chr11:34426801-34426812
49	USF1	chr11:34426527-34426954	K562	blood:	n/a	chr11:34426801-34426812
50	USF2	chr11:34426646-34426985	GM12878	blood:	n/a	chr11:34426801-34426812

Variant related genes	Relation type
ENSG00000220204	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11032672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11032702	0.92[EUR][1000 genomes]
rs1107573	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11827045	1.00[CHB][hapmap]
rs12269988	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12272630	0.92[EUR][1000 genomes]
rs12273124	0.92[EUR][1000 genomes]
rs12285026	0.92[EUR][1000 genomes]
rs12285064	0.92[EUR][1000 genomes]
rs12288793	0.92[EUR][1000 genomes]
rs12293745	0.89[EUR][1000 genomes]
rs12295136	0.94[EUR][1000 genomes]
rs16925514	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17883208	0.85[EUR][1000 genomes]
rs17884086	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57360584	0.92[EUR][1000 genomes]
rs58817388	0.94[EUR][1000 genomes]
rs59468184	0.94[EUR][1000 genomes]
rs7114869	0.94[EUR][1000 genomes]
rs7121907	0.92[EUR][1000 genomes]
rs7125892	0.89[EUR][1000 genomes]
rs73436768	0.92[EUR][1000 genomes]
rs7926613	0.84[EUR][1000 genomes]
rs9282626	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832114	chr11:34424428-34607851	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34419000-34428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34424800-34431000	Enhancers	Liver	Liver
3	chr11:34425400-34428200	Weak transcription	HepG2	liver
4	chr11:34425600-34435400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:34426200-34426800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:34426200-34427000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:34426200-34427000	Enhancers	K562	blood
8	chr11:34426200-34427400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr11:34426400-34426800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:34426400-34426800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:34426400-34427000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:34426400-34427000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:34426400-34427000	Enhancers	NH-A	brain
14	chr11:34426400-34427200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr11:34426400-34427200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:34426400-34427200	Active TSS	Adipose Nuclei	Adipose
17	chr11:34426400-34427200	Flanking Active TSS	Hela-S3	cervix
18	chr11:34426600-34426800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:34426600-34426800	Active TSS	Duodenum Mucosa	Duodenum
20	chr11:34426600-34426800	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr11:34426600-34426800	Flanking Active TSS	NHEK	skin
22	chr11:34426600-34427000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:34426600-34427000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:34426600-34427000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:34426600-34427000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
26	chr11:34426600-34427000	Flanking Active TSS	A549	lung
27	chr11:34426600-34427000	Enhancers	GM12878-XiMat	blood
28	chr11:34426600-34427000	Active TSS	HSMMtube	muscle
29	chr11:34426600-34427000	Active TSS	Osteobl	bone
30	chr11:34426600-34427200	Active TSS	NHDF-Ad	bronchial
31	chr11:34426600-34428400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links