Variant report

Variant	rs11033085
Chromosome Location	chr11:35373372-35373373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35370405..35374305-chr11:35384183..35385741,3	MCF-7	breast:
2	chr11:35369719..35371293-chr11:35371754..35374136,2	MCF-7	breast:
3	chr11:34948905..34951586-chr11:35371482..35373998,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11033078	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033088	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12274790	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12279038	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12290517	0.97[ASN][1000 genomes]
rs2273686	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3847618	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4110478	0.85[EUR][1000 genomes]
rs4996048	0.85[EUR][1000 genomes]
rs59377579	0.97[ASN][1000 genomes]
rs61454047	0.95[ASN][1000 genomes]
rs7111949	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7114489	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127728	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:35367200-35374000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:35367200-35374000	Weak transcription	Gastric	stomach
4	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:35368400-35374000	Weak transcription	Left Ventricle	heart
6	chr11:35368600-35379800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:35369000-35373800	Weak transcription	Right Atrium	heart
8	chr11:35369400-35373800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:35369800-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:35369800-35374000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:35369800-35374200	Weak transcription	Liver	Liver
12	chr11:35370000-35373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:35370000-35373400	Weak transcription	NHEK	skin
14	chr11:35370200-35373400	Weak transcription	HMEC	breast
15	chr11:35370200-35380800	Weak transcription	Aorta	Aorta
16	chr11:35370200-35384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:35370600-35376400	Weak transcription	HepG2	liver
18	chr11:35370800-35373800	Weak transcription	Pancreas	Pancrea
19	chr11:35370800-35373800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:35371200-35373400	Enhancers	Hela-S3	cervix
21	chr11:35371200-35373800	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:35371400-35373400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:35371400-35373400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:35371400-35377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:35371600-35373800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:35371800-35376800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:35371800-35376800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:35372000-35375000	Enhancers	K562	blood
29	chr11:35372200-35376800	Weak transcription	Primary T cells from cord blood	blood
30	chr11:35372200-35376800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:35372400-35376800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:35372400-35376800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:35372600-35374600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:35372600-35374600	Enhancers	Osteobl	bone
35	chr11:35372600-35377200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:35372600-35377600	Enhancers	NHDF-Ad	bronchial
37	chr11:35372800-35374200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:35372800-35374400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:35372800-35374400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:35372800-35374400	Enhancers	NH-A	brain
41	chr11:35372800-35374400	Enhancers	NHLF	lung
42	chr11:35372800-35376800	Weak transcription	GM12878-XiMat	blood
43	chr11:35372800-35377200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:35373000-35374000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:35373000-35380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:35373200-35374400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:35373200-35375000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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