Variant report

Variant	rs11033090
Chromosome Location	chr11:35378759-35378760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35373926..35376824-chr11:35378507..35382009,3	MCF-7	breast:
2	chr11:35377674..35381317-chr11:35383998..35385696,3	MCF-7	breast:
3	chr11:35345181..35347879-chr11:35376874..35378996,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10836373	0.90[EUR][1000 genomes]
rs11033071	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11033080	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11033083	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11033089	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12420201	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574069	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2273687	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901534	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847612	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3847613	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3847620	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3911898	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3925877	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4083481	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237664	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4582949	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4755397	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755398	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756210	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4756211	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4756219	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756220	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756221	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55709010	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55834429	0.89[EUR][1000 genomes]
rs56028027	0.89[EUR][1000 genomes]
rs6484785	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7114383	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72076042	0.81[ASN][1000 genomes]
rs7934047	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:35368600-35379800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:35370200-35380800	Weak transcription	Aorta	Aorta
5	chr11:35370200-35384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:35373000-35380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:35374400-35379000	Weak transcription	NHLF	lung
8	chr11:35374400-35379200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:35374400-35381400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:35374400-35381600	Weak transcription	Pancreas	Pancrea
11	chr11:35374400-35384600	Weak transcription	Psoas Muscle	Psoas
12	chr11:35374400-35384600	Weak transcription	Right Ventricle	heart
13	chr11:35374600-35379000	Weak transcription	Liver	Liver
14	chr11:35374600-35379400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:35375000-35383600	Weak transcription	Left Ventricle	heart
16	chr11:35375200-35379000	Weak transcription	Hela-S3	cervix
17	chr11:35376400-35384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:35376600-35385000	Weak transcription	HSMM	muscle
19	chr11:35376800-35379200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:35377000-35381400	Weak transcription	Brain Angular Gyrus	brain
21	chr11:35377000-35383800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:35377000-35384600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:35377000-35384600	Weak transcription	Right Atrium	heart
24	chr11:35377200-35379000	Weak transcription	HepG2	liver
25	chr11:35377200-35379200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:35377200-35379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:35377200-35379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:35377200-35380400	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:35377200-35380800	Weak transcription	Fetal Brain Male	brain
30	chr11:35377200-35381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:35377200-35384400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:35377200-35384800	Weak transcription	Osteobl	bone
33	chr11:35377600-35379400	Weak transcription	NHDF-Ad	bronchial
34	chr11:35377600-35381000	Weak transcription	HMEC	breast
35	chr11:35378200-35380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:35378600-35379000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links