Variant report

Variant	rs11033096
Chromosome Location	chr11:35387418-35387419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35387150..35387754-chr11:35411229..35411733,2	MCF-7	breast:
2	chr11:35313589..35315807-chr11:35386696..35389378,2	MCF-7	breast:
3	chr11:35347909..35350349-chr11:35386183..35388809,2	MCF-7	breast:
4	chr11:35382673..35391138-chr11:35406916..35414742,25	MCF-7	breast:
5	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
6	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
7	chr11:35386181..35389087-chr11:35424824..35428139,4	MCF-7	breast:
8	chr11:35317289..35318106-chr11:35387233..35387774,3	MCF-7	breast:
9	chr11:35281817..35285244-chr11:35384315..35387489,3	MCF-7	breast:
10	chr11:35387393..35390278-chr11:35400406..35402784,2	K562	blood:
11	chr11:35386975..35387964-chr11:35411130..35412056,2	MCF-7	breast:
12	chr11:35386128..35387848-chr11:35389214..35391974,2	K562	blood:
13	chr11:35387183..35388149-chr11:35412087..35413038,3	MCF-7	breast:
14	chr11:35316042..35322702-chr11:35383885..35387953,7	MCF-7	breast:
15	chr11:35297652..35298177-chr11:35387119..35387876,2	MCF-7	breast:
16	chr11:35195238..35197148-chr11:35385944..35388591,2	MCF-7	breast:
17	chr11:35385110..35389283-chr11:35389686..35393364,5	MCF-7	breast:
18	chr11:35385915..35388299-chr11:35402926..35406679,3	MCF-7	breast:
19	chr11:35301697..35307899-chr11:35384037..35387970,7	MCF-7	breast:
20	chr11:35342676..35347000-chr11:35384036..35388623,5	MCF-7	breast:
21	chr11:35291340..35293011-chr11:35387176..35389030,2	MCF-7	breast:
22	chr11:35315251..35317672-chr11:35387334..35389699,2	MCF-7	breast:
23	chr11:35367320..35368822-chr11:35387386..35389201,2	MCF-7	breast:
24	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
25	chr11:35285135..35288083-chr11:35386749..35388761,2	MCF-7	breast:
26	chr11:35359115..35360850-chr11:35385171..35387976,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255004	Chromatin interaction
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10836379	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10836384	0.84[MEX][hapmap]
rs11033097	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11033098	0.81[ASW][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap]
rs11033099	0.84[MEX][hapmap]
rs1923298	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7116961	0.84[MEX][hapmap]
rs7931664	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7931955	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3359146	chr11:35386910-35388389	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35383000-35387600	Enhancers	Pancreas	Pancrea
2	chr11:35383800-35388200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:35384800-35389800	Enhancers	Osteobl	bone
4	chr11:35385400-35388000	Enhancers	Brain Anterior Caudate	brain
5	chr11:35385600-35388200	Enhancers	Lung	lung
6	chr11:35385600-35388200	Weak transcription	Right Ventricle	heart
7	chr11:35385600-35388800	Weak transcription	Aorta	Aorta
8	chr11:35385800-35388200	Weak transcription	Right Atrium	heart
9	chr11:35385800-35388400	Enhancers	Stomach Smooth Muscle	stomach
10	chr11:35385800-35390200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:35385800-35394600	Weak transcription	Left Ventricle	heart
12	chr11:35385800-35394600	Weak transcription	Psoas Muscle	Psoas
13	chr11:35386000-35388800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:35386000-35390200	Weak transcription	Brain Angular Gyrus	brain
15	chr11:35386200-35388600	Weak transcription	Fetal Heart	heart
16	chr11:35386200-35390800	Weak transcription	Fetal Brain Male	brain
17	chr11:35386400-35388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:35386400-35388600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:35386400-35398600	Weak transcription	Fetal Brain Female	brain
20	chr11:35386600-35387600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:35386600-35388000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:35386600-35388400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:35386600-35388800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:35386600-35389000	Weak transcription	NH-A	brain
25	chr11:35386800-35387800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:35386800-35388600	Weak transcription	HSMMtube	muscle
27	chr11:35386800-35388600	Weak transcription	NHLF	lung
28	chr11:35386800-35388800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:35387000-35387600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:35387000-35387800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:35387000-35388600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:35387000-35388600	Weak transcription	NHDF-Ad	bronchial
33	chr11:35387000-35389800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:35387000-35390200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:35387000-35390200	Weak transcription	Brain Substantia Nigra	brain
36	chr11:35387200-35387600	Enhancers	HepG2	liver
37	chr11:35387200-35387800	Enhancers	Brain Hippocampus Middle	brain
38	chr11:35387400-35388200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:35387400-35389000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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