Variant report

Variant	rs11038927
Chromosome Location	chr11:46599248-46599249
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46578962..46580967-chr11:46596699..46599276,2	K562	blood:
2	chr11:46598069..46600663-chr11:46627236..46629113,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10160701	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838602	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038897	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038900	0.94[EUR][1000 genomes]
rs11038906	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038914	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038919	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819869	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12272795	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12283172	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12292425	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12295266	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573978	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574250	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574668	0.93[EUR][1000 genomes]
rs12575519	0.94[EUR][1000 genomes]
rs12576115	0.89[EUR][1000 genomes]
rs12576317	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12576359	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12577142	0.91[EUR][1000 genomes]
rs12578042	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1472001	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1489192	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16938506	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17197116	0.90[ASN][1000 genomes]
rs2046768	0.94[EUR][1000 genomes]
rs2067482	0.94[EUR][1000 genomes]
rs2171667	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171668	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279465	0.94[EUR][1000 genomes]
rs2291487	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864072	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864076	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2902858	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34406563	0.92[EUR][1000 genomes]
rs35324223	0.82[EUR][1000 genomes]
rs35623865	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3740974	0.94[EUR][1000 genomes]
rs3740977	0.93[EUR][1000 genomes]
rs3802888	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4307676	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4423142	0.82[EUR][1000 genomes]
rs55657382	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55661562	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55750336	0.90[ASN][1000 genomes]
rs55896955	0.83[EUR][1000 genomes]
rs56349329	0.81[EUR][1000 genomes]
rs57535407	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57744667	0.81[EUR][1000 genomes]
rs58147945	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59319338	0.91[EUR][1000 genomes]
rs60722866	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60932698	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882678	0.86[EUR][1000 genomes]
rs61882682	0.92[EUR][1000 genomes]
rs61882683	0.87[EUR][1000 genomes]
rs61882691	0.94[EUR][1000 genomes]
rs61882701	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882702	0.94[EUR][1000 genomes]
rs61882706	0.93[EUR][1000 genomes]
rs61882709	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882710	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882711	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882712	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882720	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882743	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882746	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882748	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882750	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882756	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882757	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882758	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884262	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61884264	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61884271	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61884273	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61884274	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61884292	0.83[EUR][1000 genomes]
rs61884295	0.81[EUR][1000 genomes]
rs6485682	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6485685	0.94[EUR][1000 genomes]
rs7108770	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109698	0.84[EUR][1000 genomes]
rs7112229	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7122039	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125907	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126316	0.88[EUR][1000 genomes]
rs7126343	0.90[EUR][1000 genomes]
rs7127529	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128092	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7130141	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73449983	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7481312	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484002	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs756343	0.90[ASN][1000 genomes]
rs7924401	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7930103	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932866	0.82[EUR][1000 genomes]
rs7936413	0.94[EUR][1000 genomes]
rs7946705	0.94[EUR][1000 genomes]
rs7951579	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951870	0.94[EUR][1000 genomes]
rs876701	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46568800-46611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:46568800-46612600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:46578000-46606200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:46579800-46606600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:46583000-46609600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:46583000-46613000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:46583200-46603800	Weak transcription	Right Atrium	heart
8	chr11:46583200-46606200	Weak transcription	K562	blood
9	chr11:46583200-46611800	Weak transcription	Thymus	Thymus
10	chr11:46583200-46612200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:46583200-46613800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:46583400-46608400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:46583600-46612400	Weak transcription	Primary B cells from cord blood	blood
14	chr11:46584000-46613600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:46586600-46613800	Weak transcription	NH-A	brain
16	chr11:46587000-46602200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:46587600-46602000	Weak transcription	Hela-S3	cervix
18	chr11:46587800-46613200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:46589000-46614000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:46589600-46609600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:46589600-46613000	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:46589600-46613000	Weak transcription	Fetal Stomach	stomach
23	chr11:46589600-46614000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:46589800-46599800	Weak transcription	Fetal Intestine Small	intestine
25	chr11:46591400-46611000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:46591800-46612200	Weak transcription	Aorta	Aorta
27	chr11:46592600-46601400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:46592600-46612200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:46592600-46612200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:46592800-46600600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:46592800-46604000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:46592800-46606000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:46592800-46608200	Weak transcription	Primary T cells from cord blood	blood
34	chr11:46592800-46612200	Weak transcription	NHEK	skin
35	chr11:46592800-46612600	Weak transcription	Fetal Lung	lung
36	chr11:46592800-46613600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:46593000-46601800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:46593000-46612200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:46593000-46612600	Weak transcription	HSMMtube	muscle
40	chr11:46593200-46601600	Weak transcription	Fetal Heart	heart
41	chr11:46593200-46610600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:46593200-46612200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:46593400-46603600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:46593400-46606200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:46594000-46612200	Weak transcription	Fetal Kidney	kidney
46	chr11:46594200-46612200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:46594400-46601200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:46596600-46601600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:46596800-46603800	Weak transcription	A549	lung
50	chr11:46596800-46606200	Weak transcription	Dnd41	blood

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