Variant report

Variant	rs11039012
Chromosome Location	chr11:46883318-46883319
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10466476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038987	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	1.00[ASN][1000 genomes]
rs11822959	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[ASN][1000 genomes]
rs3136434	1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[ASN][1000 genomes]
rs59197251	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.82[EUR][1000 genomes]
rs7108147	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115986	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868000-46909000	Weak transcription	Small Intestine	intestine
2	chr11:46868400-46884200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:46868600-46885400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46868600-46894400	Weak transcription	HMEC	breast
5	chr11:46868600-46895200	Weak transcription	Fetal Heart	heart
6	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
7	chr11:46868800-46884200	Weak transcription	NHEK	skin
8	chr11:46868800-46913000	Weak transcription	A549	lung
9	chr11:46869000-46886800	Weak transcription	NHDF-Ad	bronchial
10	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:46876000-46905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:46876200-46894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:46876600-46889400	Weak transcription	Colonic Mucosa	Colon
14	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:46877000-46884600	Weak transcription	Gastric	stomach
17	chr11:46877200-46887400	Strong transcription	Brain Anterior Caudate	brain
18	chr11:46877400-46888800	Weak transcription	Psoas Muscle	Psoas
19	chr11:46877400-46909200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:46877400-46909200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:46877800-46886600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:46877800-46891200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
27	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:46878000-46889800	Weak transcription	Aorta	Aorta
29	chr11:46878000-46908200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:46878400-46886800	Weak transcription	HSMM	muscle
31	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:46878800-46887400	Strong transcription	HepG2	liver
34	chr11:46879000-46909000	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:46879200-46901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:46879400-46883800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:46879400-46886600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:46879400-46887400	Strong transcription	Brain Substantia Nigra	brain
39	chr11:46879600-46886600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:46879800-46886800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:46879800-46887200	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:46880000-46901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:46880200-46887000	Strong transcription	Brain Hippocampus Middle	brain
45	chr11:46880400-46885800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:46880800-46884200	Weak transcription	Liver	Liver
47	chr11:46880800-46886000	Weak transcription	Ovary	ovary
48	chr11:46880800-46886600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:46880800-46892600	Weak transcription	Lung	lung
50	chr11:46880800-46896800	Weak transcription	Adipose Nuclei	Adipose

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