Variant report

Variant	rs11039018
Chromosome Location	chr11:46909524-46909525
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1007738	0.81[ASN][1000 genomes]
rs10742784	0.87[ASN][1000 genomes]
rs10769211	0.84[ASN][1000 genomes]
rs10769212	0.85[ASN][1000 genomes]
rs10838624	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838627	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838628	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838629	0.92[ASN][1000 genomes]
rs11038994	0.84[EUR][1000 genomes]
rs11038999	0.82[EUR][1000 genomes]
rs11039002	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11039014	0.85[ASN][1000 genomes]
rs11039017	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039024	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11606992	0.83[EUR][1000 genomes]
rs12807111	0.88[ASN][1000 genomes]
rs1551744	0.81[ASN][1000 genomes]
rs1809293	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2035068	0.96[ASN][1000 genomes]
rs2290883	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290884	0.85[ASN][1000 genomes]
rs2306026	0.85[ASN][1000 genomes]
rs2306027	0.97[ASN][1000 genomes]
rs2306028	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2306033	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306035	0.94[ASN][1000 genomes]
rs2306036	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306037	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867219	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2903522	0.94[ASN][1000 genomes]
rs3816614	0.85[ASN][1000 genomes]
rs3829940	0.84[ASN][1000 genomes]
rs4469848	0.84[EUR][1000 genomes]
rs4752936	0.84[EUR][1000 genomes]
rs4752940	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4752941	0.84[EUR][1000 genomes]
rs4752946	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4752947	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58389391	0.87[EUR][1000 genomes]
rs60258676	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7107778	0.81[ASN][1000 genomes]
rs7118170	0.97[ASN][1000 genomes]
rs7119247	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7480140	0.81[ASN][1000 genomes]
rs7480260	0.81[ASN][1000 genomes]
rs7934421	0.81[ASN][1000 genomes]
rs7941252	0.85[ASN][1000 genomes]
rs7941964	0.82[EUR][1000 genomes]
rs7943866	0.85[ASN][1000 genomes]
rs898604	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964551	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11039018	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46868600-46917400	Weak transcription	Fetal Brain Male	brain
2	chr11:46868800-46913000	Weak transcription	A549	lung
3	chr11:46875600-46917200	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:46876600-46911400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:46876600-46916600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:46877400-46912000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:46877400-46912600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:46877600-46919000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:46877800-46912200	Strong transcription	Fetal Stomach	stomach
10	chr11:46877800-46912400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:46878400-46909600	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:46879800-46918200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:46880800-46910800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
16	chr11:46887600-46918600	Weak transcription	NHDF-Ad	bronchial
17	chr11:46895400-46917400	Weak transcription	NHLF	lung
18	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
19	chr11:46897400-46921800	Weak transcription	HMEC	breast
20	chr11:46897600-46916800	Weak transcription	Psoas Muscle	Psoas
21	chr11:46897600-46917200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:46898600-46914400	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:46898600-46916600	Weak transcription	Liver	Liver
24	chr11:46898800-46916600	Weak transcription	Gastric	stomach
25	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
26	chr11:46899000-46910400	Weak transcription	NHEK	skin
27	chr11:46899000-46916000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:46899600-46914200	Weak transcription	Brain Germinal Matrix	brain
29	chr11:46900400-46914600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
31	chr11:46901000-46913400	Weak transcription	Right Ventricle	heart
32	chr11:46901400-46917400	Weak transcription	NH-A	brain
33	chr11:46903000-46912000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:46905000-46912000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr11:46905000-46917800	Weak transcription	Right Atrium	heart
36	chr11:46905200-46912000	Strong transcription	Brain Substantia Nigra	brain
37	chr11:46905200-46912200	Strong transcription	Fetal Intestine Small	intestine
38	chr11:46905600-46917400	Weak transcription	Esophagus	oesophagus
39	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:46906600-46911000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:46907800-46910800	Weak transcription	Pancreas	Pancrea
43	chr11:46908000-46910200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:46908000-46910400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:46908000-46910600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:46908000-46915200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:46908000-46916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:46908000-46916800	Weak transcription	Lung	lung
49	chr11:46908000-46917400	Weak transcription	Colonic Mucosa	Colon
50	chr11:46908200-46910200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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