Variant report

Variant	rs11039024
Chromosome Location	chr11:46923168-46923169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46911530..46913407-chr11:46920458..46923271,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1007738	0.97[CHD][hapmap];0.91[JPT][hapmap]
rs10734548	0.97[CHD][hapmap];0.91[JPT][hapmap]
rs10769211	0.97[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10769212	0.82[ASN][1000 genomes]
rs10769226	0.86[MEX][hapmap]
rs10838624	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838627	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838628	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838629	0.88[ASN][1000 genomes]
rs10838644	0.81[MEX][hapmap]
rs10838652	0.82[MEX][hapmap]
rs11038977	0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs11038994	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11038999	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11039002	0.97[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11039014	0.97[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11039017	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11039018	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11039035	0.93[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11600292	0.85[MEX][hapmap]
rs11606992	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12575609	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12807111	0.99[ASN][1000 genomes]
rs1551744	0.97[CHD][hapmap];0.86[JPT][hapmap]
rs17790204	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1809293	0.84[EUR][1000 genomes]
rs2035068	0.92[ASN][1000 genomes]
rs2290883	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2290884	0.82[ASN][1000 genomes]
rs2306026	0.82[ASN][1000 genomes]
rs2306027	0.90[ASN][1000 genomes]
rs2306028	0.95[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2306033	0.97[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2306035	0.90[ASN][1000 genomes]
rs2306036	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306037	0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2867219	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2903522	0.85[ASN][1000 genomes]
rs3136431	0.91[YRI][hapmap]
rs3136441	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3136447	0.91[JPT][hapmap]
rs3136457	0.90[JPT][hapmap]
rs3136460	0.91[JPT][hapmap]
rs3136497	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs3136519	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs3816614	0.82[ASN][1000 genomes]
rs3829940	0.80[ASN][1000 genomes]
rs4076557	0.83[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs4294527	0.91[JPT][hapmap]
rs4394802	0.80[JPT][hapmap]
rs4469848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4494268	0.93[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs4581406	0.82[MEX][hapmap]
rs4603264	1.00[ASW][hapmap];0.91[YRI][hapmap]
rs4752815	0.82[MEX][hapmap]
rs4752816	0.82[MEX][hapmap]
rs4752932	0.97[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs4752933	0.97[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs4752936	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4752940	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4752941	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4752946	0.97[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4752947	0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58389391	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5896	0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs60258676	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6485694	0.88[YRI][hapmap]
rs6485715	0.83[MEX][hapmap]
rs6485716	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6485726	0.82[MEX][hapmap]
rs7101374	0.97[CHD][hapmap];0.91[JPT][hapmap]
rs7107778	0.97[CHD][hapmap];0.91[JPT][hapmap]
rs7112854	0.82[MEX][hapmap]
rs7118170	0.90[ASN][1000 genomes]
rs7119247	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7124648	0.82[MEX][hapmap]
rs7126005	0.82[MEX][hapmap]
rs7128650	0.82[MEX][hapmap]
rs7130947	0.83[MEX][hapmap]
rs7929294	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7938169	0.83[MEX][hapmap]
rs7940441	0.87[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs7941252	0.81[ASN][1000 genomes]
rs7943866	0.82[ASN][1000 genomes]
rs7950753	0.90[MEX][hapmap]
rs898604	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs964551	0.97[CHD][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11039024	DDB2	Cis_1M	lymphoblastoid	RTeQTL
rs11039024	ACP2	cis	lymphoblastoid	seeQTL
rs11039024	FNBP4	cis	cerebellum	SCAN
rs11039024	PTPMT1	cis	parietal	SCAN
rs11039024	LRP4	cis	parietal	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
2	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
3	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
4	chr11:46916000-46923400	Strong transcription	Fetal Lung	lung
5	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:46917800-46934000	Weak transcription	NHLF	lung
7	chr11:46918200-46924400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:46918200-46925400	Weak transcription	Fetal Brain Male	brain
9	chr11:46918400-46925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:46918600-46924200	Weak transcription	Right Atrium	heart
11	chr11:46918800-46925400	Weak transcription	HSMMtube	muscle
12	chr11:46918800-46928000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:46918800-46934000	Weak transcription	Colonic Mucosa	Colon
14	chr11:46919800-46923200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:46919800-46923400	Strong transcription	Fetal Muscle Leg	muscle
16	chr11:46919800-46927800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:46920000-46923200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr11:46920000-46923400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:46920400-46928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:46920600-46923200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:46920600-46924400	Weak transcription	Lung	lung
22	chr11:46920600-46925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:46921200-46923400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:46921200-46924400	Weak transcription	Left Ventricle	heart
25	chr11:46921200-46928400	Weak transcription	Fetal Brain Female	brain
26	chr11:46921600-46924400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:46921600-46924600	Weak transcription	Right Ventricle	heart
28	chr11:46921600-46925200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:46921600-46925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:46921600-46925400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:46921600-46927400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:46921600-46928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:46921600-46928000	Weak transcription	Ovary	ovary
34	chr11:46921600-46933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:46921600-46933800	Weak transcription	NHEK	skin
36	chr11:46921600-46934000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:46921600-46934200	Weak transcription	Esophagus	oesophagus
38	chr11:46921600-46936000	Weak transcription	Pancreas	Pancrea
39	chr11:46921600-46936000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:46921800-46924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:46921800-46924400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:46921800-46924800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:46921800-46928000	Weak transcription	HepG2	liver
44	chr11:46921800-46934000	Weak transcription	Fetal Intestine Large	intestine
45	chr11:46921800-46938400	Weak transcription	Gastric	stomach
46	chr11:46922000-46924200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:46922000-46924600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:46922000-46924600	Weak transcription	Spleen	Spleen
49	chr11:46922000-46925200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:46922000-46925200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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