Variant report

Variant	rs11039045
Chromosome Location	chr11:46990695-46990696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11039049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136520	1.00[AMR][1000 genomes]
rs4647752	1.00[AFR][1000 genomes]
rs7125350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
2	chr11:46959200-46993800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:46970600-46993200	Weak transcription	Small Intestine	intestine
4	chr11:46971000-46992400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:46971600-46995600	Weak transcription	Pancreas	Pancrea
6	chr11:46971600-47006600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:46974200-46998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:46974200-47008400	Weak transcription	Primary T cells from cord blood	blood
9	chr11:46980400-46998600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:46980400-46998600	Weak transcription	Thymus	Thymus
11	chr11:46980600-46992600	Weak transcription	Fetal Lung	lung
12	chr11:46980600-46995400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46980600-46995400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:46980600-46995400	Weak transcription	Fetal Stomach	stomach
15	chr11:46980600-46998600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:46980600-46999600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:46980600-47014000	Weak transcription	Aorta	Aorta
18	chr11:46980600-47021000	Weak transcription	Ovary	ovary
19	chr11:46980600-47026000	Weak transcription	HSMM	muscle
20	chr11:46981200-47023400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:46981400-46997400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:46982600-46997000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:46982800-46993200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:46982800-46998400	Weak transcription	Fetal Brain Female	brain
25	chr11:46983000-46993400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:46983000-46993800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr11:46983000-46997000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:46983000-47024000	Weak transcription	Primary B cells from cord blood	blood
29	chr11:46983200-46993400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:46983400-46998600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:46984000-46997000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:46985000-46997400	Weak transcription	GM12878-XiMat	blood
33	chr11:46986400-46993800	Weak transcription	Fetal Intestine Small	intestine
34	chr11:46986600-46994800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:46986600-46995600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:46986600-46997400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:46987600-46991000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:46988400-46991000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:46988400-46992800	Strong transcription	Hela-S3	cervix
40	chr11:46988400-46995000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:46988600-46997800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:46989200-47026000	Weak transcription	Dnd41	blood
43	chr11:46989800-46998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:46990600-46991200	Enhancers	Brain Angular Gyrus	brain
45	chr11:46990600-46991400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:46990600-46991400	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr11:46990600-46991600	Enhancers	Brain Hippocampus Middle	brain
48	chr11:46990600-46991600	Enhancers	Brain Substantia Nigra	brain

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