Variant report

Variant	rs11039049
Chromosome Location	chr11:46998915-46998916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46993954..46995802-chr11:46998173..47000292,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11039045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039103	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3136520	1.00[AMR][1000 genomes]
rs4647752	1.00[AFR][1000 genomes]
rs7125350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46971600-47006600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:46974200-47008400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:46980600-46999600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:46980600-47014000	Weak transcription	Aorta	Aorta
5	chr11:46980600-47021000	Weak transcription	Ovary	ovary
6	chr11:46980600-47026000	Weak transcription	HSMM	muscle
7	chr11:46981200-47023400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:46983000-47024000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:46989200-47026000	Weak transcription	Dnd41	blood
10	chr11:46994000-47026000	Weak transcription	Colonic Mucosa	Colon
11	chr11:46994200-47000200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:46994200-47004800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:46994200-47021000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:46994400-47014800	Weak transcription	Esophagus	oesophagus
15	chr11:46994600-46999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:46995400-46999000	Weak transcription	Fetal Lung	lung
17	chr11:46995400-46999400	Weak transcription	Osteobl	bone
18	chr11:46995400-47004400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:46996000-47006600	Weak transcription	Fetal Intestine Small	intestine
20	chr11:46996000-47011400	Weak transcription	Pancreas	Pancrea
21	chr11:46996000-47025800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:46996600-46999400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:46997000-47002200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:46997200-47000400	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:46997400-46999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:46997400-47002200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:46997600-46999800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:46997600-47000400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:46997600-47000400	Enhancers	Brain Angular Gyrus	brain
30	chr11:46997600-47000800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:46998000-47000000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr11:46998000-47000000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:46998200-46999600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr11:46998200-46999800	Enhancers	Fetal Heart	heart
35	chr11:46998200-47000000	Enhancers	H9 Cell Line	embryonic stem cell
36	chr11:46998400-46999000	Flanking Active TSS	Fetal Brain Female	brain
37	chr11:46998400-46999000	Enhancers	Fetal Muscle Leg	muscle
38	chr11:46998400-46999400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:46998400-46999400	Enhancers	A549	lung
40	chr11:46998400-46999600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:46998400-46999600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr11:46998400-46999600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:46998400-46999600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:46998400-46999800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:46998400-47000000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:46998400-47000000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:46998400-47000000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:46998400-47000200	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr11:46998400-47000400	Enhancers	Hela-S3	cervix
50	chr11:46998600-46999000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links