Variant report

Variant	rs11039057
Chromosome Location	chr11:47015296-47015297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10769225	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769226	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769227	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769228	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838635	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838640	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838641	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838644	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838646	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838652	0.85[ASN][1000 genomes]
rs10838658	0.81[ASN][1000 genomes]
rs11039028	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039033	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039035	0.85[ASN][1000 genomes]
rs11039080	0.82[ASN][1000 genomes]
rs11039081	0.84[ASN][1000 genomes]
rs11600292	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11602250	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11608083	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417519	0.81[ASN][1000 genomes]
rs17790204	0.90[ASN][1000 genomes]
rs34340483	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3922684	0.81[ASN][1000 genomes]
rs4269876	0.81[ASN][1000 genomes]
rs4315028	0.84[ASN][1000 genomes]
rs4394802	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4494268	0.92[ASN][1000 genomes]
rs4498951	0.81[ASN][1000 genomes]
rs4528282	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4548577	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4576779	0.80[ASN][1000 genomes]
rs4581406	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4587689	0.81[ASN][1000 genomes]
rs4752815	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752816	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752951	0.84[ASN][1000 genomes]
rs61896133	0.81[ASN][1000 genomes]
rs61896136	0.81[ASN][1000 genomes]
rs6485715	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485716	0.90[ASN][1000 genomes]
rs6485726	0.85[ASN][1000 genomes]
rs7108822	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111270	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112854	0.81[ASN][1000 genomes]
rs7114683	0.85[ASN][1000 genomes]
rs7123632	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7124648	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7126005	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127741	0.85[ASN][1000 genomes]
rs7128193	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128650	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7130947	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7929688	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7935346	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7938169	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7939786	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7945558	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946739	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7950753	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46980600-47021000	Weak transcription	Ovary	ovary
2	chr11:46980600-47026000	Weak transcription	HSMM	muscle
3	chr11:46981200-47023400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:46983000-47024000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:46989200-47026000	Weak transcription	Dnd41	blood
6	chr11:46994000-47026000	Weak transcription	Colonic Mucosa	Colon
7	chr11:46994200-47021000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:46996000-47025800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:46998800-47023200	Weak transcription	Fetal Brain Male	brain
10	chr11:46999000-47019400	Weak transcription	Fetal Stomach	stomach
11	chr11:46999600-47023600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:47000000-47024600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:47000200-47025200	Weak transcription	NH-A	brain
14	chr11:47000200-47026400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:47000400-47023400	Weak transcription	Osteobl	bone
16	chr11:47000400-47024600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:47000400-47026600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:47002000-47017600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:47003400-47015600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:47003400-47021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:47003400-47032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:47003600-47024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:47005400-47026200	Weak transcription	Fetal Intestine Large	intestine
24	chr11:47005800-47019600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:47005800-47024000	Weak transcription	K562	blood
26	chr11:47005800-47025800	Weak transcription	HSMMtube	muscle
27	chr11:47006000-47023600	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:47006000-47026400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:47006800-47023400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:47006800-47023600	Weak transcription	NHLF	lung
31	chr11:47006800-47026000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:47007000-47024000	Weak transcription	Small Intestine	intestine
33	chr11:47007200-47023800	Weak transcription	Fetal Intestine Small	intestine
34	chr11:47007200-47024000	Weak transcription	Fetal Thymus	thymus
35	chr11:47007400-47026000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:47009000-47020600	Weak transcription	Lung	lung
37	chr11:47009600-47019000	Weak transcription	Primary T cells from cord blood	blood
38	chr11:47009600-47023400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:47009800-47023600	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:47011000-47024600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:47011400-47023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:47011600-47021000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:47011600-47024600	Weak transcription	Adipose Nuclei	Adipose
44	chr11:47011800-47015800	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:47011800-47019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:47011800-47019600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:47011800-47021800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:47011800-47023200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:47011800-47023400	Weak transcription	Brain Anterior Caudate	brain
50	chr11:47011800-47023600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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