Variant report

Variant	rs11039073
Chromosome Location	chr11:47072713-47072714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11039030	0.91[YRI][hapmap]
rs11039078	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs11039082	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12275667	1.00[AMR][1000 genomes]
rs12278549	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs12281521	0.85[YRI][hapmap]
rs12284293	0.83[AMR][1000 genomes]
rs7108434	0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs73462070	1.00[AMR][1000 genomes]
rs73463811	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:47056400-47073600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:47056600-47073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:47057200-47074200	Weak transcription	Hela-S3	cervix
8	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:47064000-47077600	Weak transcription	Fetal Lung	lung
11	chr11:47065000-47079000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:47065200-47073000	Weak transcription	Fetal Stomach	stomach
13	chr11:47067000-47077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:47068200-47079000	Weak transcription	Fetal Brain Male	brain
15	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:47070200-47080000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:47070400-47079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:47071200-47074400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:47071600-47089000	Weak transcription	Gastric	stomach
20	chr11:47072000-47075000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:47072200-47073200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:47072200-47073200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:47072200-47075400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:47072200-47080800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:47072200-47082000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:47072400-47073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:47072400-47073200	Enhancers	Osteobl	bone
28	chr11:47072400-47074000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:47072400-47079200	Weak transcription	Primary B cells from cord blood	blood
30	chr11:47072600-47072800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:47072600-47072800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:47072600-47072800	Enhancers	A549	lung
33	chr11:47072600-47073000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:47072600-47073000	Enhancers	NHDF-Ad	bronchial
35	chr11:47072600-47093000	Weak transcription	Ovary	ovary

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