Variant report

Variant	rs11039087
Chromosome Location	chr11:47117132-47117133
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11039051	1.00[AMR][1000 genomes]
rs11039071	0.84[AFR][1000 genomes]
rs12272266	0.81[AMR][1000 genomes]
rs12293894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4084459	0.81[AMR][1000 genomes]
rs59812946	0.80[AFR][1000 genomes]
rs60793721	1.00[AMR][1000 genomes]
rs6485729	0.91[AFR][1000 genomes]
rs6485743	0.82[AFR][1000 genomes]
rs7125863	1.00[AMR][1000 genomes]
rs73462094	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73462095	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930424	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541032	chr11:47108596-47121969	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541033	chr11:47113897-47125838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47089400-47120800	Weak transcription	Hela-S3	cervix
2	chr11:47094000-47125200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:47100800-47121000	Weak transcription	HSMMtube	muscle
4	chr11:47106200-47121000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47110000-47126000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:47113400-47120000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:47115400-47122000	Weak transcription	Pancreas	Pancrea
8	chr11:47116200-47117400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:47116200-47118200	Enhancers	Fetal Lung	lung
10	chr11:47116400-47118200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:47116400-47118400	Enhancers	HepG2	liver
12	chr11:47116600-47117400	Enhancers	Fetal Intestine Small	intestine
13	chr11:47116600-47118200	Enhancers	Brain Anterior Caudate	brain
14	chr11:47116800-47117400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:47117000-47120400	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links