Variant report

Variant	rs11039095
Chromosome Location	chr11:47125402-47125403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47122507..47125305-chr11:47125314..47127703,3	K562	blood:
2	chr11:47124265..47126644-chr11:47130581..47133177,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11039045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11039103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11039143	1.00[CEU][hapmap]
rs11039169	1.00[AFR][1000 genomes]
rs11039179	1.00[AFR][1000 genomes]
rs11039180	1.00[AFR][1000 genomes]
rs12226522	1.00[AFR][1000 genomes]
rs12226869	1.00[AFR][1000 genomes]
rs4647752	1.00[AFR][1000 genomes]
rs6485752	0.82[EUR][1000 genomes]
rs7125350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938933	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541033	chr11:47113897-47125838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47110000-47126000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:47117400-47125800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47121200-47130600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:47121200-47132600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:47121400-47125600	Weak transcription	NHLF	lung
6	chr11:47121400-47125800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:47121400-47129000	Weak transcription	Hela-S3	cervix
8	chr11:47121600-47125600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:47121600-47125600	Weak transcription	NH-A	brain
10	chr11:47121600-47125800	Weak transcription	Osteobl	bone
11	chr11:47121600-47140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:47121800-47125600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:47122000-47125800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:47122000-47127400	Weak transcription	Stomach Mucosa	stomach
15	chr11:47122200-47126000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:47122400-47125800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:47122400-47126000	Weak transcription	Gastric	stomach
18	chr11:47122400-47140400	Weak transcription	Pancreas	Pancrea
19	chr11:47123000-47125600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:47123000-47125800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:47123000-47132600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:47123400-47125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:47123600-47125600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:47123600-47125600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:47123600-47125600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:47123600-47127600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:47123800-47125600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:47123800-47125600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:47123800-47125600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:47123800-47125600	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:47124400-47125600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:47124400-47125600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:47124400-47125800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:47124400-47125800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:47124400-47125800	Weak transcription	Fetal Brain Female	brain
36	chr11:47124600-47128200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:47124600-47132800	Weak transcription	Thymus	Thymus
38	chr11:47124600-47133000	Weak transcription	Fetal Thymus	thymus
39	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
40	chr11:47125000-47126400	Enhancers	Brain Germinal Matrix	brain
41	chr11:47125000-47128400	Enhancers	Brain Anterior Caudate	brain
42	chr11:47125200-47125600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:47125200-47125600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:47125200-47125600	Enhancers	HSMMtube	muscle
45	chr11:47125200-47126800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:47125200-47129400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:47125200-47132400	Enhancers	Fetal Muscle Leg	muscle
48	chr11:47125400-47125800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:47125400-47125800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:47125400-47126800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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