Variant report

Variant	rs11039099
Chromosome Location	chr11:47141496-47141497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11039045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11039103	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11039104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11039128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039143	1.00[CEU][hapmap]
rs11039169	1.00[AFR][1000 genomes]
rs11039179	1.00[AFR][1000 genomes]
rs11039180	1.00[AFR][1000 genomes]
rs12226522	1.00[AFR][1000 genomes]
rs12226869	1.00[AFR][1000 genomes]
rs4640	1.00[CEU][hapmap]
rs4647730	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs4647731	1.00[CEU][hapmap];0.87[CHD][hapmap]
rs4647752	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7125350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7943429	1.00[CEU][hapmap];0.87[CHD][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:47128800-47143400	Weak transcription	Gastric	stomach
3	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
4	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
5	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
6	chr11:47131600-47150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:47131600-47155000	Weak transcription	Right Atrium	heart
8	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:47131800-47150600	Weak transcription	Fetal Stomach	stomach
10	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:47132400-47144800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:47132600-47155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:47140400-47159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:47141000-47142600	Weak transcription	K562	blood
15	chr11:47141000-47143200	Weak transcription	Pancreas	Pancrea
16	chr11:47141000-47148000	Weak transcription	NHEK	skin
17	chr11:47141000-47159000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:47141000-47159400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:47141200-47141800	Enhancers	HepG2	liver
21	chr11:47141200-47144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:47141200-47145000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:47141200-47145000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:47141200-47150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:47141200-47151000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:47141200-47154200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:47141200-47158400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:47141200-47159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:47141400-47141800	Weak transcription	Liver	Liver

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