Variant report

Variant	rs11039130
Chromosome Location	chr11:47229316-47229317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10838696	0.82[CHB][hapmap]
rs11039138	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11039149	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs11039182	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs11039183	0.82[CHB][hapmap]
rs11988	0.82[CHB][hapmap]
rs2697923	0.82[CHB][hapmap]
rs7944584	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11039130	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47224400-47230200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:47226400-47235800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:47226600-47234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:47227200-47231000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:47227200-47231200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:47227200-47231200	Weak transcription	HMEC	breast
7	chr11:47227200-47231400	Weak transcription	NHEK	skin
8	chr11:47227200-47235600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:47229000-47229400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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