Variant report

Variant	rs11039131
Chromosome Location	chr11:47232038-47232039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11039122	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12365578	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12803718	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1685404	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740690	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs752848	0.84[AFR][1000 genomes]
rs752850	0.84[AFR][1000 genomes]
rs901750	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11039131	LRP4	cis	Nerve Tibial	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47226400-47235800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:47226600-47234600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:47227200-47235600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47231000-47232400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:47231200-47232400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:47231400-47232400	Enhancers	NHEK	skin
7	chr11:47231600-47232400	Weak transcription	HepG2	liver
8	chr11:47231600-47235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:47232000-47235800	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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