Variant report

Variant	rs11039169
Chromosome Location	chr11:47326971-47326972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47325857..47328064-chr11:47331829..47334187,2	K562	blood:
2	chr11:47289944..47291652-chr11:47325650..47328230,2	MCF-7	breast:
3	chr11:47315662..47317702-chr11:47325532..47327163,2	MCF-7	breast:
4	chr11:47322137..47324018-chr11:47326754..47328942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11039095	1.00[AFR][1000 genomes]
rs11039099	1.00[AFR][1000 genomes]
rs11039103	1.00[AFR][1000 genomes]
rs11039104	1.00[AFR][1000 genomes]
rs11039128	1.00[AFR][1000 genomes]
rs11039179	1.00[AFR][1000 genomes]
rs11039180	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs11039214	1.00[AFR][1000 genomes]
rs11039252	1.00[AFR][1000 genomes]
rs12221989	1.00[CHB][hapmap]
rs12226522	1.00[AFR][1000 genomes]
rs12226869	1.00[AFR][1000 genomes]
rs4647752	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47294600-47355200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:47295400-47340200	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:47295400-47341000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:47295400-47352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:47295600-47338800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:47295800-47340600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:47295800-47352800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:47296000-47353600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:47296200-47327000	Strong transcription	Adipose Nuclei	Adipose
10	chr11:47296200-47340400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:47300000-47341200	Strong transcription	Placenta	Placenta
12	chr11:47303200-47340600	Strong transcription	Hela-S3	cervix
13	chr11:47311800-47348800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:47316200-47328200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:47317800-47327000	Weak transcription	HMEC	breast
16	chr11:47318000-47329800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:47320000-47328000	Weak transcription	Small Intestine	intestine
18	chr11:47320600-47327200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:47321000-47328600	Strong transcription	Liver	Liver
20	chr11:47321000-47328800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:47321400-47330400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:47322400-47341000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:47322800-47327800	Strong transcription	A549	lung
24	chr11:47323000-47332000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:47323400-47341600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:47323400-47352400	Strong transcription	Thymus	Thymus
27	chr11:47324000-47334600	Strong transcription	Rectal Smooth Muscle	rectum
28	chr11:47324000-47334800	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr11:47324000-47334800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:47324200-47327000	Strong transcription	Osteobl	bone
31	chr11:47324200-47328400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:47324200-47354600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:47324600-47327000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:47324600-47328200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr11:47324600-47328200	Strong transcription	Fetal Lung	lung
36	chr11:47324600-47331600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:47324600-47341400	Strong transcription	Primary T cells from cord blood	blood
38	chr11:47324600-47346800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:47324800-47327000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:47324800-47327200	Strong transcription	Lung	lung
41	chr11:47324800-47327400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:47324800-47327400	Weak transcription	Fetal Brain Male	brain
43	chr11:47324800-47330000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:47324800-47330400	Weak transcription	NH-A	brain
45	chr11:47324800-47331400	Strong transcription	Primary B cells from cord blood	blood
46	chr11:47324800-47331600	Strong transcription	Ovary	ovary
47	chr11:47324800-47337200	Strong transcription	Dnd41	blood
48	chr11:47324800-47341000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:47324800-47352600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:47325000-47329600	Weak transcription	Fetal Kidney	kidney

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