Variant report

Variant	rs11039177
Chromosome Location	chr11:47339341-47339342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1050244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10838677	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11039143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11039160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039179	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11039185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11530167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2697919	0.83[EUR][1000 genomes]
rs3729936	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3729948	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729991	1.00[AMR][1000 genomes]
rs45603841	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647718	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647730	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647731	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647738	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4647752	1.00[AMR][1000 genomes]
rs56023479	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57741802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57852039	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58528246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58912703	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61124822	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7110333	1.00[AMR][1000 genomes]
rs7943429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47294600-47355200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:47295400-47340200	Strong transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:47295400-47341000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:47295400-47352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:47295800-47340600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:47295800-47352800	Strong transcription	Duodenum Mucosa	Duodenum
7	chr11:47296000-47353600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:47296200-47340400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr11:47300000-47341200	Strong transcription	Placenta	Placenta
10	chr11:47303200-47340600	Strong transcription	Hela-S3	cervix
11	chr11:47311800-47348800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:47322400-47341000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:47323400-47341600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:47323400-47352400	Strong transcription	Thymus	Thymus
15	chr11:47324200-47354600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr11:47324600-47341400	Strong transcription	Primary T cells from cord blood	blood
17	chr11:47324600-47346800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:47324800-47341000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:47324800-47352600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:47325000-47352400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:47325000-47352800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:47325200-47340400	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:47325200-47341000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:47325200-47344000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:47325200-47347000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:47325400-47341400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:47325400-47346600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:47325400-47349200	Strong transcription	Fetal Thymus	thymus
29	chr11:47325400-47353000	Strong transcription	Fetal Intestine Small	intestine
30	chr11:47326000-47353600	Strong transcription	Fetal Stomach	stomach
31	chr11:47327400-47341200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:47327600-47340400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr11:47327800-47352200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:47328000-47340600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:47328000-47341000	Strong transcription	Adipose Nuclei	Adipose
36	chr11:47328200-47351400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:47328400-47340400	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:47329000-47341000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:47329200-47340400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:47329400-47339600	Strong transcription	Left Ventricle	heart
41	chr11:47329600-47340400	Strong transcription	Brain Hippocampus Middle	brain
42	chr11:47329800-47339400	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:47329800-47340200	Strong transcription	Brain Substantia Nigra	brain
44	chr11:47329800-47341400	Strong transcription	Fetal Intestine Large	intestine
45	chr11:47330200-47340400	Strong transcription	Liver	Liver
46	chr11:47330600-47340400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:47330600-47341600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:47330800-47345200	Weak transcription	Stomach Mucosa	stomach
49	chr11:47331400-47345800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:47332400-47340200	Strong transcription	Brain Inferior Temporal Lobe	brain

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