Variant report

Variant	rs11039189
Chromosome Location	chr11:47358035-47358036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47357637..47360736-chr11:47361620..47364167,4	K562	blood:
2	chr11:47348171..47351381-chr11:47356672..47359891,3	MCF-7	breast:
3	chr11:47347273..47351481-chr11:47353649..47359054,5	K562	blood:
4	chr11:47344879..47353948-chr11:47354460..47361122,13	K562	blood:

Variant related genes	Relation type
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1051006	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10769253	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10769254	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769255	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10838685	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10838686	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838689	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039155	0.86[EUR][1000 genomes]
rs11493249	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11530166	0.82[AMR][1000 genomes]
rs12574081	0.86[EUR][1000 genomes]
rs1449626	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2254240	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279238	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2290146	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2290148	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3729802	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3729804	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3729805	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752977	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752978	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752979	0.83[AMR][1000 genomes]
rs4752983	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58023804	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59567949	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485751	0.83[AMR][1000 genomes]
rs7124958	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753992	0.99[EUR][1000 genomes]
rs7928073	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv554209	chr11:47353498-47364127	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11039189	ACP2	Cis_1M	lymphoblastoid	RTeQTL
rs11039189	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47343200-47370600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:47348000-47358200	Weak transcription	K562	blood
3	chr11:47351400-47358800	Weak transcription	Aorta	Aorta
4	chr11:47351400-47375600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:47351600-47358400	Weak transcription	A549	lung
6	chr11:47351600-47358600	Weak transcription	Hela-S3	cervix
7	chr11:47352400-47364000	Weak transcription	Lung	lung
8	chr11:47352600-47363200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:47352600-47366000	Weak transcription	Brain Germinal Matrix	brain
10	chr11:47352800-47361600	Weak transcription	Brain Anterior Caudate	brain
11	chr11:47353000-47360600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:47353200-47358600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:47353400-47358400	Weak transcription	Placenta	Placenta
14	chr11:47353600-47362800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:47353600-47375400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:47354000-47360400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:47354000-47369800	Weak transcription	Right Atrium	heart
18	chr11:47354200-47358200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:47354200-47361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:47354400-47359200	Strong transcription	Left Ventricle	heart
21	chr11:47354400-47361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:47354400-47362600	Weak transcription	Fetal Intestine Small	intestine
23	chr11:47354600-47358600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:47354800-47372800	Weak transcription	Gastric	stomach
25	chr11:47355000-47358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:47355000-47362800	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:47355400-47358800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:47356000-47358600	Weak transcription	Spleen	Spleen
29	chr11:47356200-47358400	Enhancers	Fetal Heart	heart
30	chr11:47356600-47362000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr11:47356800-47367200	Strong transcription	Right Ventricle	heart

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