Variant report

Variant	rs11039291
Chromosome Location	chr11:47574416-47574417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47571371..47576564-chr11:47585605..47588889,10	MCF-7	breast:
2	chr1:156630814..156631497-chr11:47573906..47574694,2	Hela-S3	cervix:
3	chr11:47573178..47576577-chr11:47600513..47602811,3	K562	blood:
4	chr11:47571923..47578059-chr11:47583779..47591283,17	MCF-7	breast:
5	chr11:47519377..47521750-chr11:47574004..47575986,3	MCF-7	breast:
6	chr11:47572538..47574748-chr11:47599210..47602112,3	MCF-7	breast:
7	chr11:47572750..47576231-chr11:47662956..47665605,3	K562	blood:
8	chr11:47573610..47575378-chr11:47787922..47789822,2	MCF-7	breast:
9	chr11:47574238..47574738-chr3:167452944..167453711,2	Hela-S3	cervix:
10	chr11:47572291..47576392-chr11:47598056..47603377,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000123444	Chromatin interaction
ENSG00000200376	Chromatin interaction
ENSG00000109919	Chromatin interaction
ENSG00000229953	Chromatin interaction
ENSG00000231880	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000110536	Chromatin interaction
ENSG00000163536	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2176403	0.82[AFR][1000 genomes]
rs60582355	1.00[ASN][1000 genomes]
rs7109710	1.00[ASN][1000 genomes]
rs908597	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv314	chr11:47561564-47606256	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47572400-47574600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:47572600-47575200	Active TSS	Psoas Muscle	Psoas
3	chr11:47572800-47574800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:47572800-47575000	Active TSS	NHDF-Ad	bronchial
5	chr11:47572800-47575200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:47573000-47575000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:47573000-47575000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:47573000-47575000	Active TSS	NHLF	lung
9	chr11:47573000-47575200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr11:47573000-47575200	Active TSS	Aorta	Aorta
11	chr11:47573000-47575200	Active TSS	HSMMtube	muscle
12	chr11:47573000-47575400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr11:47573000-47575400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:47573000-47575400	Active TSS	Brain Angular Gyrus	brain
15	chr11:47573200-47575000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:47573200-47575000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:47573200-47575000	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:47573200-47575000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:47573200-47575000	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr11:47573200-47575000	Active TSS	Brain Hippocampus Middle	brain
21	chr11:47573200-47575000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:47573200-47575000	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr11:47573200-47575000	Active TSS	HMEC	breast
24	chr11:47573200-47575000	Active TSS	K562	blood
25	chr11:47573200-47575200	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr11:47573200-47575200	Active TSS	H1 Cell Line	embryonic stem cell
27	chr11:47573200-47575200	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr11:47573200-47575200	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:47573200-47575200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:47573200-47575200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:47573200-47575200	Active TSS	Colon Smooth Muscle	Colon
32	chr11:47573200-47575400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:47573200-47575400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:47573200-47575400	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr11:47573200-47575400	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr11:47573200-47575400	Active TSS	Right Atrium	heart
37	chr11:47573200-47575400	Active TSS	A549	lung
38	chr11:47573200-47575400	Active TSS	GM12878-XiMat	blood
39	chr11:47573200-47575400	Active TSS	HSMM	muscle
40	chr11:47573200-47575600	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr11:47573400-47574800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:47573400-47574800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:47573400-47575000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:47573400-47575000	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr11:47573400-47575000	Active TSS	Fetal Intestine Large	intestine
46	chr11:47573400-47575000	Active TSS	Small Intestine	intestine
47	chr11:47573400-47575000	Active TSS	HUVEC	blood vessel
48	chr11:47573400-47575000	Active TSS	NHEK	skin
49	chr11:47573400-47575200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:47573400-47575200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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